Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_018085.1 Length=41992 Score E Sequences producing significant alignments: (Bits) Value seq20250 1397 0.0 >seq20250 Length=26292 Score = 1397 bits (1548), Expect = 0.0 Identities = 1447/1893 (76%), Gaps = 2/1893 (0%) Strand=Plus/Plus Query 21331 TGTTAGAAAGATATCTTGTACGAAATGATTATGTATCAGCGGCTAAATTATTATCCAATG 21390 ||||||||| ||||||| ||||||| |||| |||| || ||| | ||| ||| Sbjct 23410 TGTTAGAAAAGCATCTTGTGAAAAATGATCATGTTGCAGCAGCGAAACTTTTAAGTGATG 23469 Query 21391 GGATTCATTATGGCGTGAAAATTGGTGGAGTGGGATTCATTACCTATGTATTTGTTCGAA 21450 | || ||||||| ||| || |||||||| | |||||| |||||||| ||| || Sbjct 23470 GAATATATTATGGAATGAGGATAGGTGGAGTTTGTTTCATTGGTTATGTATTCATTCAAA 23529 Query 21451 TTGTAATTATGTTCTAGG-AGGCTTGT-CATGGGAATCATAAAAGAATGGCTTCATAAGA 21508 |||| ||||| |||| ||| | |||||| || |||| || ||||||||||| Sbjct 23530 TTGTGGAGATGTTTTAGGGAGGAAATTACATGGGGATTTTAAAGGATTGGCTTCATAAAC 23589 Query 21509 GGTCTTTAAAGCACCAGATTATTGAGGTGTTCCAAAAGGCAGGTTTATATACGGAACATC 21568 ||| ||| | | |||| ||||| || |||||||||||||||| || |||| Sbjct 23590 AAAGTTTGAAGAATCGACTTATAGAGGTATTTGTAAAGGCAGGTTTATATGTAGACCATC 23649 Query 21569 AAACACGTGGAGGGAAAATCCCAATTTATCCAAAGGTTCATGCTGTTTTTTCTTCAAACG 21628 ||||| | || || ||| | || ||||| || ||| | |||| ||||||| || || | Sbjct 23650 AAACAAGAGGTGGAAAAGTACCCATTTACCCGAAGATACATGACATTTTTTCCTCGAAAG 23709 Query 21629 AAAGCGTGAAATATGTATTTACTATCCCCAACGGATTAGATCCAAAGACAATTGAAAAGA 21688 ||| || ||| ||||||| || || |||||||||||||| || | |||||||||| Sbjct 23710 AAAAGGTTCGATACATATTTACCATTCCAAACGGATTAGATCCGAAAAACATTGAAAAGA 23769 Query 21689 AATGGTTTTGCTTTCAACAAATATTTGGACGGAATGTAGCAATTGAGGGAGATATTAAAA 21748 | ||||||||||||||||||||||| || || |||||||||||||| || |||||||||| Sbjct 23770 AGTGGTTTTGCTTTCAACAAATATTAGGGCGTAATGTAGCAATTGAAGGTGATATTAAAA 23829 Query 21749 AGTTTGTGCTCAATGTATTTCATTCTGATTGTGGTTTGAAACAATACAACTACAGTTATA 21808 |||||| || ||||| |||||||| ||| ||| | || |||||| |||||||||| Sbjct 23830 GGTTTGTACTTAATGTGTTTCATTCGGATGCTGGGCTACAAGCATACAATTACAGTTATA 23889 Query 21809 AGCAATGGCAGCCATTCATAAAAGAATGCCGTCTTCCTATTGTAGTAGGGCGTGACCAGT 21868 || | ||||| ||||| | | | || | |||||| | | |||||||||||||| | Sbjct 23890 AGAAGTGGCAACCATTACTTATACAACATCATCTTCCCGTAATTGTAGGGCGTGACCAAT 23949 Query 21869 TTGGAAACATGCTTGTTTATGATATGGTAAACCCCAATACACCCCATTTACTCATTGCAG 21928 ||||||| ||| || ||||| ||| | | || || || ||| | || ||||||| Sbjct 23950 TTGGAAATATGATTACGTATGACATGATTGCTTCAAACACGCCGCATCTTCTAATTGCAG 24009 Query 21929 GAGAAACAGGTAGCGGAAAAAGTAGCATGGTACGTGTTGTACTATCTACACTCATTCAAT 21988 |||| ||||| |||||||||||||| |||||||| |||||||| || ||||||||||||| Sbjct 24010 GAGAGACAGGGAGCGGAAAAAGTAGTATGGTACGCGTTGTACTGTCCACACTCATTCAAT 24069 Query 21989 GCGTGTCTCCTGATAAATTATATTTGTACCTAGGCGACTTGAAAAATTCTGAATTTCATT 22048 ||||||||||||||||| |||||||||| || || ||||| ||||| |||||||||| Sbjct 24070 ATATGTCTCCTGATAAATTACATTTGTACCTGGGTGATTTGAAGAATTCCGAATTTCATT 24129 Query 22049 TCTTGCGTAGAGTAAAACATGTGAAAGAAGTGTGCATGGAAGAAATTGAAATGAAAGTCA 22108 ||||||| || || ||||| || ||||| || |||||||||||||| |||||||| | | Sbjct 24130 TCTTGCGAAGGGTGAAACACGTAAAAGAGGTTTGCATGGAAGAAATAGAAATGAAGATTA 24189 Query 22109 TGCTTCATAAGGTTTGGAATGAAATCAGGGAACGCAGAAAGCTCATGGAAGAATATGAAG 22168 |||| || || || ||||| ||||| | ||||| ||||| | |||||||| ||||||| Sbjct 24190 TGCTGCAGAAAGTGTGGAAGGAAATACGCGAACGTAGAAAATTGATGGAAGAGTATGAAG 24249 Query 22169 TGGATCACATTGATGAGTACAATAAATTAAATCCTGATAAACAGAAACCCTATATTCTGT 22228 | ||||| ||||| || ||||| ||||||||||||||||| |||||||| ||||| | Sbjct 24250 TAGATCATATTGACGAATACAACAAATTAAATCCTGATAATCAGAAACCATATATCTTAC 24309 Query 22229 TAGCTATTGATGAAGTAGCGATGCTACAAGATGAAAAAGAATGTATGACGACAATAGAAA 22288 | ||||| || ||||| | ||| | ||||||||||||||||||||| | | | | |||| Sbjct 24310 TTGCTATCGACGAAGTGGTCATGTTGCAAGATGAAAAAGAATGTATGTCTATAGTTGAAA 24369 Query 22289 AAATATCGGCAGTTGGTCGGGCACTAGGCGTATTCCTCATGCTATCTATGCAAAGACCAG 22348 ||||||||||||| || ||||||| || || || | |||||| ||||||| | || | Sbjct 24370 AAATATCGGCAGTCGGAAGGGCACTTGGAGTTTTTTTAATGCTAAGTATGCAACGCCCTG 24429 Query 22349 ATGCAAAGGTGTTAGATGGTAAGTTAAAGCTAAATATGACGGTTAGAATGGGCTTTAAAT 22408 ||||||| || | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24430 ATGCAAAAGTACTGGATGGTAAGTTAAAGCTCAATATGACGGTTAGAATGGGCTTTAAAT 24489 Query 22409 GCGATAACACAATTAATAGTAATATTATGGGTACATCTGGATCAGAACACTTAGAACAAT 22468 | |||| |||||||| ||||||||||||||||| |||| ||||||| ||| || |||| Sbjct 24490 GTGATAGTACAATTAACAGTAATATTATGGGTACTCCTGGTTCAGAACGCTTGGAGCAAT 24549 Query 22469 CTGGCCAAATGATTTTAAAGTTAAATGGATTAAAGAAAGTGCAAGCTCCTTATTTAGAAC 22528 ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 24550 CTGGCCAAATGATATTAAAGTTAAATGGATTAAAGAAAGTACAATCTCCTTATTTAGAAT 24609 Query 22529 TTAATAAAGCAAAGCAAATAGTTGAACCTTACCGTTTACTCAAAGAAGATATAACGTTTC 22588 | | |||||| ||| | |||||||||||||| || | | ||||| |||||| ||| | Sbjct 24610 TAAGTAAAGCCAAGAAGATAGTTGAACCTTATCGCGTTCCGAAAGAGAATATAAAGTTGC 24669 Query 22589 AGAATTCGCTACAACAAGAACTTCCTTTGTTTGGAGTGTTGGAACATGAAGAGTAGAGAT 22648 | || | |||| ||||| || || || || ||||| || |||| || |||||| Sbjct 24670 AAAACCTACCACAAGAAGAAAATCAATTATTCGGGGTGTTAGATTATGAGGAATAGAGAC 24729 Query 22649 AAAGCGATTATAAAAGACTTATGCCGCTTTAGATGCCTATCACGAGATGATATTATCGAT 22708 ||||| || |||| | || | |||||||| | || || ||||| ||||| ||| Sbjct 24730 AAAGCCATACTAAACAATTTGAAGCTTTTTAGATGTATGTCTCGTGATGACATTATTGAT 24789 Query 22709 TTGCATTTCCAAGGACTCAAGAAAGCTGTGACCAGTTGCAATACGGTTATGAAACGATTA 22768 |||||||| |||||| | ||||| || || || | || |||||||| ||||| |||||| Sbjct 24790 TTGCATTTTCAAGGATTAAAGAACGCGGTTACATGCTGTAATACGGTGATGAAGCGATTA 24849 Query 22769 AGTCGAGATGGGAGTGTGGAAGTAAATGTGTTACAGAAACCATATATCTACTTTCCACAA 22828 || ||||||| |||||| | ||| | | || | ||||| || ||||| || ||| Sbjct 24850 AGAAGAGATGGTCATGTGGATGCCAATATCTCGCAACAGCCATACATTTACTTCCCTCAA 24909 Query 22829 CCGAGTCCGATTCGAAAAACAAGTCAAAAGATTCCGCACTTCCTTGCTATTGTGAATGTA 22888 | || | |||| ||||| || ||||||||||| ||||| || | || | ||||| Sbjct 24910 TCCAGCACACTTCGCAAAACTAGCCAAAAGATTCCCCACTTTCTAGGCATATTAGATGTA 24969 Query 22889 TATAAGCAACTTCTTCAGTACGAAAAGCCTAAATTGTTTAAAGTCGAGCCGAAGTATGGT 22948 ||||| || ||| | | || ||||| |||||| |||||||||| ||||| ||||| ||| Sbjct 24970 TATAAACAGCTTATCTATTATGAAAAACCTAAACTGTTTAAAGTGGAGCCAAAGTACGGT 25029 Query 22949 AAAGCATATATGGAGCCAGACATATTTGCAATTTGGCGACAATCTCCATTTTTCATAGAA 23008 |||| || ||||| || || |||| |||||||||| ||||||||| ||||| ||| Sbjct 25030 AAAGAATTCATGGAACCTGATGCATTTACAATTTGGCGTAGATCTCCATTCTTCATTGAA 25089 Query 23009 GTGCAGAATTCGGTATACAGTAAGAAAGTAATGCAAGAGAAATTAAACCGATATGAATTT 23068 || |||| || || ||||| || ||||| |||||||| ||| |||| | |||||||| Sbjct 25090 GTCCAGAGGTCAGTTTACAGCAAAAAAGTTATGCAAGATAAAATAAATAGGTATGAATTA 25149 Query 23069 TACTTTCATAGTTTGGAATGGCAACAAGAACCATGGCAACCCAAGAAATCGAAATACTTC 23128 ||||| || ||| ||||||||| | ||| | ||||| || || |||| |||||||| Sbjct 25150 TACTTCCACAGTCAGGAATGGCATAACGAATCTTGGCAGCCAAAAGAATCTAAATACTTT 25209 Query 23129 CCTTCTCTTCTGGTAATTACCGATAGCCAGTATGACATCTCCTCTTCAAATTTTCGCATA 23188 || || | || ||||||| || | | ||| | ||| ||||| | | || || Sbjct 25210 CCATCAATACTTATAATTACTGAAAAGTATTATAATATCAGCTCTTTTAGCCTACGTATT 25269 Query 23189 TTTCAAGCTAAATCCATTCACGATTTCATGAAT 23221 ||||||||| || ||| ||||| ||||| Sbjct 25270 TTTCAAGCTTCTTCAATTAGTAATTTCTTGAAT 25302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134206925398700