Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_018277.1
Length=42784
Score E
Sequences producing significant alignments: (Bits) Value
seq20250 1397 0.0
>seq20250
Length=26292
Score = 1397 bits (1548), Expect = 0.0
Identities = 1447/1893 (76%), Gaps = 2/1893 (0%)
Strand=Plus/Plus
Query 22719 TGTTAGAAAGATATCTTGTACGAAATGATTATGTATCAGCGGCTAAATTATTATCCAATG 22778
||||||||| ||||||| ||||||| |||| |||| || ||| | ||| |||
Sbjct 23410 TGTTAGAAAAGCATCTTGTGAAAAATGATCATGTTGCAGCAGCGAAACTTTTAAGTGATG 23469
Query 22779 GGATTCATTATGGCGTGAAAATTGGTGGAGTGGGATTCATTACCTATGTATTTGTTCGAA 22838
| || ||||||| ||| || |||||||| | |||||| |||||||| ||| ||
Sbjct 23470 GAATATATTATGGAATGAGGATAGGTGGAGTTTGTTTCATTGGTTATGTATTCATTCAAA 23529
Query 22839 TTGTAATTATGTTCTAGG-AGGCTTGT-CATGGGAATCATAAAAGAATGGCTTCATAAGA 22896
|||| ||||| |||| ||| | |||||| || |||| || |||||||||||
Sbjct 23530 TTGTGGAGATGTTTTAGGGAGGAAATTACATGGGGATTTTAAAGGATTGGCTTCATAAAC 23589
Query 22897 GGTCTTTAAAGCACCAGATTATTGAGGTGTTCCAAAAGGCAGGTTTATATACGGAACATC 22956
||| ||| | | |||| ||||| || |||||||||||||||| || ||||
Sbjct 23590 AAAGTTTGAAGAATCGACTTATAGAGGTATTTGTAAAGGCAGGTTTATATGTAGACCATC 23649
Query 22957 AAACACGTGGAGGGAAAATCCCAATTTATCCAAAGGTTCATGCTGTTTTTTCTTCAAACG 23016
||||| | || || ||| | || ||||| || ||| | |||| ||||||| || || |
Sbjct 23650 AAACAAGAGGTGGAAAAGTACCCATTTACCCGAAGATACATGACATTTTTTCCTCGAAAG 23709
Query 23017 AAAGCGTGAAATATGTATTTACTATCCCCAACGGATTAGATCCAAAGACAATTGAAAAGA 23076
||| || ||| ||||||| || || |||||||||||||| || | ||||||||||
Sbjct 23710 AAAAGGTTCGATACATATTTACCATTCCAAACGGATTAGATCCGAAAAACATTGAAAAGA 23769
Query 23077 AATGGTTTTGCTTTCAACAAATATTTGGACGGAATGTAGCAATTGAGGGAGATATTAAAA 23136
| ||||||||||||||||||||||| || || |||||||||||||| || ||||||||||
Sbjct 23770 AGTGGTTTTGCTTTCAACAAATATTAGGGCGTAATGTAGCAATTGAAGGTGATATTAAAA 23829
Query 23137 AGTTTGTGCTCAATGTATTTCATTCTGATTGTGGTTTGAAACAATACAACTACAGTTATA 23196
|||||| || ||||| |||||||| ||| ||| | || |||||| ||||||||||
Sbjct 23830 GGTTTGTACTTAATGTGTTTCATTCGGATGCTGGGCTACAAGCATACAATTACAGTTATA 23889
Query 23197 AGCAATGGCAGCCATTCATAAAAGAATGCCGTCTTCCTATTGTAGTAGGGCGTGACCAGT 23256
|| | ||||| ||||| | | | || | |||||| | | |||||||||||||| |
Sbjct 23890 AGAAGTGGCAACCATTACTTATACAACATCATCTTCCCGTAATTGTAGGGCGTGACCAAT 23949
Query 23257 TTGGAAACATGCTTGTTTATGATATGGTAAACCCCAATACACCCCATTTACTCATTGCAG 23316
||||||| ||| || ||||| ||| | | || || || ||| | || |||||||
Sbjct 23950 TTGGAAATATGATTACGTATGACATGATTGCTTCAAACACGCCGCATCTTCTAATTGCAG 24009
Query 23317 GAGAAACAGGTAGCGGAAAAAGTAGCATGGTACGTGTTGTACTATCTACACTCATTCAAT 23376
|||| ||||| |||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 24010 GAGAGACAGGGAGCGGAAAAAGTAGTATGGTACGCGTTGTACTGTCCACACTCATTCAAT 24069
Query 23377 GCGTGTCTCCTGATAAATTATATTTGTACCTAGGCGACTTGAAAAATTCTGAATTTCATT 23436
||||||||||||||||| |||||||||| || || ||||| ||||| ||||||||||
Sbjct 24070 ATATGTCTCCTGATAAATTACATTTGTACCTGGGTGATTTGAAGAATTCCGAATTTCATT 24129
Query 23437 TCTTGCGTAGAGTAAAACATGTGAAAGAAGTGTGCATGGAAGAAATTGAAATGAAAGTCA 23496
||||||| || || ||||| || ||||| || |||||||||||||| |||||||| | |
Sbjct 24130 TCTTGCGAAGGGTGAAACACGTAAAAGAGGTTTGCATGGAAGAAATAGAAATGAAGATTA 24189
Query 23497 TGCTTCATAAGGTTTGGAATGAAATCAGGGAACGCAGAAAGCTCATGGAAGAATATGAAG 23556
|||| || || || ||||| ||||| | ||||| ||||| | |||||||| |||||||
Sbjct 24190 TGCTGCAGAAAGTGTGGAAGGAAATACGCGAACGTAGAAAATTGATGGAAGAGTATGAAG 24249
Query 23557 TGGATCACATTGATGAGTACAATAAATTAAATCCTGATAAACAGAAACCCTATATTCTGT 23616
| ||||| ||||| || ||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 24250 TAGATCATATTGACGAATACAACAAATTAAATCCTGATAATCAGAAACCATATATCTTAC 24309
Query 23617 TAGCTATTGATGAAGTAGCGATGCTACAAGATGAAAAAGAATGTATGACGACAATAGAAA 23676
| ||||| || ||||| | ||| | ||||||||||||||||||||| | | | | ||||
Sbjct 24310 TTGCTATCGACGAAGTGGTCATGTTGCAAGATGAAAAAGAATGTATGTCTATAGTTGAAA 24369
Query 23677 AAATATCGGCAGTTGGTCGGGCACTAGGCGTATTCCTCATGCTATCTATGCAAAGACCAG 23736
||||||||||||| || ||||||| || || || | |||||| ||||||| | || |
Sbjct 24370 AAATATCGGCAGTCGGAAGGGCACTTGGAGTTTTTTTAATGCTAAGTATGCAACGCCCTG 24429
Query 23737 ATGCAAAGGTGTTAGATGGTAAGTTAAAGCTAAATATGACGGTTAGAATGGGCTTTAAAT 23796
||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24430 ATGCAAAAGTACTGGATGGTAAGTTAAAGCTCAATATGACGGTTAGAATGGGCTTTAAAT 24489
Query 23797 GCGATAACACAATTAATAGTAATATTATGGGTACATCTGGATCAGAACACTTAGAACAAT 23856
| |||| |||||||| ||||||||||||||||| |||| ||||||| ||| || ||||
Sbjct 24490 GTGATAGTACAATTAACAGTAATATTATGGGTACTCCTGGTTCAGAACGCTTGGAGCAAT 24549
Query 23857 CTGGCCAAATGATTTTAAAGTTAAATGGATTAAAGAAAGTGCAAGCTCCTTATTTAGAAC 23916
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 24550 CTGGCCAAATGATATTAAAGTTAAATGGATTAAAGAAAGTACAATCTCCTTATTTAGAAT 24609
Query 23917 TTAATAAAGCAAAGCAAATAGTTGAACCTTACCGTTTACTCAAAGAAGATATAACGTTTC 23976
| | |||||| ||| | |||||||||||||| || | | ||||| |||||| ||| |
Sbjct 24610 TAAGTAAAGCCAAGAAGATAGTTGAACCTTATCGCGTTCCGAAAGAGAATATAAAGTTGC 24669
Query 23977 AGAATTCGCTACAACAAGAACTTCCTTTGTTTGGAGTGTTGGAACATGAAGAGTAGAGAT 24036
| || | |||| ||||| || || || || ||||| || |||| || ||||||
Sbjct 24670 AAAACCTACCACAAGAAGAAAATCAATTATTCGGGGTGTTAGATTATGAGGAATAGAGAC 24729
Query 24037 AAAGCGATTATAAAAGACTTATGCCGCTTTAGATGCCTATCACGAGATGATATTATCGAT 24096
||||| || |||| | || | |||||||| | || || ||||| ||||| |||
Sbjct 24730 AAAGCCATACTAAACAATTTGAAGCTTTTTAGATGTATGTCTCGTGATGACATTATTGAT 24789
Query 24097 TTGCATTTCCAAGGACTCAAGAAAGCTGTGACCAGTTGCAATACGGTTATGAAACGATTA 24156
|||||||| |||||| | ||||| || || || | || |||||||| ||||| ||||||
Sbjct 24790 TTGCATTTTCAAGGATTAAAGAACGCGGTTACATGCTGTAATACGGTGATGAAGCGATTA 24849
Query 24157 AGTCGAGATGGGAGTGTGGAAGTAAATGTGTTACAGAAACCATATATCTACTTTCCACAA 24216
|| ||||||| |||||| | ||| | | || | ||||| || ||||| || |||
Sbjct 24850 AGAAGAGATGGTCATGTGGATGCCAATATCTCGCAACAGCCATACATTTACTTCCCTCAA 24909
Query 24217 CCGAGTCCGATTCGAAAAACAAGTCAAAAGATTCCGCACTTCCTTGCTATTGTGAATGTA 24276
| || | |||| ||||| || ||||||||||| ||||| || | || | |||||
Sbjct 24910 TCCAGCACACTTCGCAAAACTAGCCAAAAGATTCCCCACTTTCTAGGCATATTAGATGTA 24969
Query 24277 TATAAGCAACTTCTTCAGTACGAAAAGCCTAAATTGTTTAAAGTCGAGCCGAAGTATGGT 24336
||||| || ||| | | || ||||| |||||| |||||||||| ||||| ||||| |||
Sbjct 24970 TATAAACAGCTTATCTATTATGAAAAACCTAAACTGTTTAAAGTGGAGCCAAAGTACGGT 25029
Query 24337 AAAGCATATATGGAGCCAGACATATTTGCAATTTGGCGACAATCTCCATTTTTCATAGAA 24396
|||| || ||||| || || |||| |||||||||| ||||||||| ||||| |||
Sbjct 25030 AAAGAATTCATGGAACCTGATGCATTTACAATTTGGCGTAGATCTCCATTCTTCATTGAA 25089
Query 24397 GTGCAGAATTCGGTATACAGTAAGAAAGTAATGCAAGAGAAATTAAACCGATATGAATTT 24456
|| |||| || || ||||| || ||||| |||||||| ||| |||| | ||||||||
Sbjct 25090 GTCCAGAGGTCAGTTTACAGCAAAAAAGTTATGCAAGATAAAATAAATAGGTATGAATTA 25149
Query 24457 TACTTTCATAGTTTGGAATGGCAACAAGAACCATGGCAACCCAAGAAATCGAAATACTTC 24516
||||| || ||| ||||||||| | ||| | ||||| || || |||| ||||||||
Sbjct 25150 TACTTCCACAGTCAGGAATGGCATAACGAATCTTGGCAGCCAAAAGAATCTAAATACTTT 25209
Query 24517 CCTTCTCTTCTGGTAATTACCGATAGCCAGTATGACATCTCCTCTTCAAATTTTCGCATA 24576
|| || | || ||||||| || | | ||| | ||| ||||| | | || ||
Sbjct 25210 CCATCAATACTTATAATTACTGAAAAGTATTATAATATCAGCTCTTTTAGCCTACGTATT 25269
Query 24577 TTTCAAGCTAAATCCATTCACGATTTCATGAAT 24609
||||||||| || ||| ||||| |||||
Sbjct 25270 TTTCAAGCTTCTTCAATTAGTAATTTCTTGAAT 25302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136740459386300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |