Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_018277.1 Length=42784 Score E Sequences producing significant alignments: (Bits) Value seq20250 1397 0.0 >seq20250 Length=26292 Score = 1397 bits (1548), Expect = 0.0 Identities = 1447/1893 (76%), Gaps = 2/1893 (0%) Strand=Plus/Plus Query 22719 TGTTAGAAAGATATCTTGTACGAAATGATTATGTATCAGCGGCTAAATTATTATCCAATG 22778 ||||||||| ||||||| ||||||| |||| |||| || ||| | ||| ||| Sbjct 23410 TGTTAGAAAAGCATCTTGTGAAAAATGATCATGTTGCAGCAGCGAAACTTTTAAGTGATG 23469 Query 22779 GGATTCATTATGGCGTGAAAATTGGTGGAGTGGGATTCATTACCTATGTATTTGTTCGAA 22838 | || ||||||| ||| || |||||||| | |||||| |||||||| ||| || Sbjct 23470 GAATATATTATGGAATGAGGATAGGTGGAGTTTGTTTCATTGGTTATGTATTCATTCAAA 23529 Query 22839 TTGTAATTATGTTCTAGG-AGGCTTGT-CATGGGAATCATAAAAGAATGGCTTCATAAGA 22896 |||| ||||| |||| ||| | |||||| || |||| || ||||||||||| Sbjct 23530 TTGTGGAGATGTTTTAGGGAGGAAATTACATGGGGATTTTAAAGGATTGGCTTCATAAAC 23589 Query 22897 GGTCTTTAAAGCACCAGATTATTGAGGTGTTCCAAAAGGCAGGTTTATATACGGAACATC 22956 ||| ||| | | |||| ||||| || |||||||||||||||| || |||| Sbjct 23590 AAAGTTTGAAGAATCGACTTATAGAGGTATTTGTAAAGGCAGGTTTATATGTAGACCATC 23649 Query 22957 AAACACGTGGAGGGAAAATCCCAATTTATCCAAAGGTTCATGCTGTTTTTTCTTCAAACG 23016 ||||| | || || ||| | || ||||| || ||| | |||| ||||||| || || | Sbjct 23650 AAACAAGAGGTGGAAAAGTACCCATTTACCCGAAGATACATGACATTTTTTCCTCGAAAG 23709 Query 23017 AAAGCGTGAAATATGTATTTACTATCCCCAACGGATTAGATCCAAAGACAATTGAAAAGA 23076 ||| || ||| ||||||| || || |||||||||||||| || | |||||||||| Sbjct 23710 AAAAGGTTCGATACATATTTACCATTCCAAACGGATTAGATCCGAAAAACATTGAAAAGA 23769 Query 23077 AATGGTTTTGCTTTCAACAAATATTTGGACGGAATGTAGCAATTGAGGGAGATATTAAAA 23136 | ||||||||||||||||||||||| || || |||||||||||||| || |||||||||| Sbjct 23770 AGTGGTTTTGCTTTCAACAAATATTAGGGCGTAATGTAGCAATTGAAGGTGATATTAAAA 23829 Query 23137 AGTTTGTGCTCAATGTATTTCATTCTGATTGTGGTTTGAAACAATACAACTACAGTTATA 23196 |||||| || ||||| |||||||| ||| ||| | || |||||| |||||||||| Sbjct 23830 GGTTTGTACTTAATGTGTTTCATTCGGATGCTGGGCTACAAGCATACAATTACAGTTATA 23889 Query 23197 AGCAATGGCAGCCATTCATAAAAGAATGCCGTCTTCCTATTGTAGTAGGGCGTGACCAGT 23256 || | ||||| ||||| | | | || | |||||| | | |||||||||||||| | Sbjct 23890 AGAAGTGGCAACCATTACTTATACAACATCATCTTCCCGTAATTGTAGGGCGTGACCAAT 23949 Query 23257 TTGGAAACATGCTTGTTTATGATATGGTAAACCCCAATACACCCCATTTACTCATTGCAG 23316 ||||||| ||| || ||||| ||| | | || || || ||| | || ||||||| Sbjct 23950 TTGGAAATATGATTACGTATGACATGATTGCTTCAAACACGCCGCATCTTCTAATTGCAG 24009 Query 23317 GAGAAACAGGTAGCGGAAAAAGTAGCATGGTACGTGTTGTACTATCTACACTCATTCAAT 23376 |||| ||||| |||||||||||||| |||||||| |||||||| || ||||||||||||| Sbjct 24010 GAGAGACAGGGAGCGGAAAAAGTAGTATGGTACGCGTTGTACTGTCCACACTCATTCAAT 24069 Query 23377 GCGTGTCTCCTGATAAATTATATTTGTACCTAGGCGACTTGAAAAATTCTGAATTTCATT 23436 ||||||||||||||||| |||||||||| || || ||||| ||||| |||||||||| Sbjct 24070 ATATGTCTCCTGATAAATTACATTTGTACCTGGGTGATTTGAAGAATTCCGAATTTCATT 24129 Query 23437 TCTTGCGTAGAGTAAAACATGTGAAAGAAGTGTGCATGGAAGAAATTGAAATGAAAGTCA 23496 ||||||| || || ||||| || ||||| || |||||||||||||| |||||||| | | Sbjct 24130 TCTTGCGAAGGGTGAAACACGTAAAAGAGGTTTGCATGGAAGAAATAGAAATGAAGATTA 24189 Query 23497 TGCTTCATAAGGTTTGGAATGAAATCAGGGAACGCAGAAAGCTCATGGAAGAATATGAAG 23556 |||| || || || ||||| ||||| | ||||| ||||| | |||||||| ||||||| Sbjct 24190 TGCTGCAGAAAGTGTGGAAGGAAATACGCGAACGTAGAAAATTGATGGAAGAGTATGAAG 24249 Query 23557 TGGATCACATTGATGAGTACAATAAATTAAATCCTGATAAACAGAAACCCTATATTCTGT 23616 | ||||| ||||| || ||||| ||||||||||||||||| |||||||| ||||| | Sbjct 24250 TAGATCATATTGACGAATACAACAAATTAAATCCTGATAATCAGAAACCATATATCTTAC 24309 Query 23617 TAGCTATTGATGAAGTAGCGATGCTACAAGATGAAAAAGAATGTATGACGACAATAGAAA 23676 | ||||| || ||||| | ||| | ||||||||||||||||||||| | | | | |||| Sbjct 24310 TTGCTATCGACGAAGTGGTCATGTTGCAAGATGAAAAAGAATGTATGTCTATAGTTGAAA 24369 Query 23677 AAATATCGGCAGTTGGTCGGGCACTAGGCGTATTCCTCATGCTATCTATGCAAAGACCAG 23736 ||||||||||||| || ||||||| || || || | |||||| ||||||| | || | Sbjct 24370 AAATATCGGCAGTCGGAAGGGCACTTGGAGTTTTTTTAATGCTAAGTATGCAACGCCCTG 24429 Query 23737 ATGCAAAGGTGTTAGATGGTAAGTTAAAGCTAAATATGACGGTTAGAATGGGCTTTAAAT 23796 ||||||| || | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24430 ATGCAAAAGTACTGGATGGTAAGTTAAAGCTCAATATGACGGTTAGAATGGGCTTTAAAT 24489 Query 23797 GCGATAACACAATTAATAGTAATATTATGGGTACATCTGGATCAGAACACTTAGAACAAT 23856 | |||| |||||||| ||||||||||||||||| |||| ||||||| ||| || |||| Sbjct 24490 GTGATAGTACAATTAACAGTAATATTATGGGTACTCCTGGTTCAGAACGCTTGGAGCAAT 24549 Query 23857 CTGGCCAAATGATTTTAAAGTTAAATGGATTAAAGAAAGTGCAAGCTCCTTATTTAGAAC 23916 ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 24550 CTGGCCAAATGATATTAAAGTTAAATGGATTAAAGAAAGTACAATCTCCTTATTTAGAAT 24609 Query 23917 TTAATAAAGCAAAGCAAATAGTTGAACCTTACCGTTTACTCAAAGAAGATATAACGTTTC 23976 | | |||||| ||| | |||||||||||||| || | | ||||| |||||| ||| | Sbjct 24610 TAAGTAAAGCCAAGAAGATAGTTGAACCTTATCGCGTTCCGAAAGAGAATATAAAGTTGC 24669 Query 23977 AGAATTCGCTACAACAAGAACTTCCTTTGTTTGGAGTGTTGGAACATGAAGAGTAGAGAT 24036 | || | |||| ||||| || || || || ||||| || |||| || |||||| Sbjct 24670 AAAACCTACCACAAGAAGAAAATCAATTATTCGGGGTGTTAGATTATGAGGAATAGAGAC 24729 Query 24037 AAAGCGATTATAAAAGACTTATGCCGCTTTAGATGCCTATCACGAGATGATATTATCGAT 24096 ||||| || |||| | || | |||||||| | || || ||||| ||||| ||| Sbjct 24730 AAAGCCATACTAAACAATTTGAAGCTTTTTAGATGTATGTCTCGTGATGACATTATTGAT 24789 Query 24097 TTGCATTTCCAAGGACTCAAGAAAGCTGTGACCAGTTGCAATACGGTTATGAAACGATTA 24156 |||||||| |||||| | ||||| || || || | || |||||||| ||||| |||||| Sbjct 24790 TTGCATTTTCAAGGATTAAAGAACGCGGTTACATGCTGTAATACGGTGATGAAGCGATTA 24849 Query 24157 AGTCGAGATGGGAGTGTGGAAGTAAATGTGTTACAGAAACCATATATCTACTTTCCACAA 24216 || ||||||| |||||| | ||| | | || | ||||| || ||||| || ||| Sbjct 24850 AGAAGAGATGGTCATGTGGATGCCAATATCTCGCAACAGCCATACATTTACTTCCCTCAA 24909 Query 24217 CCGAGTCCGATTCGAAAAACAAGTCAAAAGATTCCGCACTTCCTTGCTATTGTGAATGTA 24276 | || | |||| ||||| || ||||||||||| ||||| || | || | ||||| Sbjct 24910 TCCAGCACACTTCGCAAAACTAGCCAAAAGATTCCCCACTTTCTAGGCATATTAGATGTA 24969 Query 24277 TATAAGCAACTTCTTCAGTACGAAAAGCCTAAATTGTTTAAAGTCGAGCCGAAGTATGGT 24336 ||||| || ||| | | || ||||| |||||| |||||||||| ||||| ||||| ||| Sbjct 24970 TATAAACAGCTTATCTATTATGAAAAACCTAAACTGTTTAAAGTGGAGCCAAAGTACGGT 25029 Query 24337 AAAGCATATATGGAGCCAGACATATTTGCAATTTGGCGACAATCTCCATTTTTCATAGAA 24396 |||| || ||||| || || |||| |||||||||| ||||||||| ||||| ||| Sbjct 25030 AAAGAATTCATGGAACCTGATGCATTTACAATTTGGCGTAGATCTCCATTCTTCATTGAA 25089 Query 24397 GTGCAGAATTCGGTATACAGTAAGAAAGTAATGCAAGAGAAATTAAACCGATATGAATTT 24456 || |||| || || ||||| || ||||| |||||||| ||| |||| | |||||||| Sbjct 25090 GTCCAGAGGTCAGTTTACAGCAAAAAAGTTATGCAAGATAAAATAAATAGGTATGAATTA 25149 Query 24457 TACTTTCATAGTTTGGAATGGCAACAAGAACCATGGCAACCCAAGAAATCGAAATACTTC 24516 ||||| || ||| ||||||||| | ||| | ||||| || || |||| |||||||| Sbjct 25150 TACTTCCACAGTCAGGAATGGCATAACGAATCTTGGCAGCCAAAAGAATCTAAATACTTT 25209 Query 24517 CCTTCTCTTCTGGTAATTACCGATAGCCAGTATGACATCTCCTCTTCAAATTTTCGCATA 24576 || || | || ||||||| || | | ||| | ||| ||||| | | || || Sbjct 25210 CCATCAATACTTATAATTACTGAAAAGTATTATAATATCAGCTCTTTTAGCCTACGTATT 25269 Query 24577 TTTCAAGCTAAATCCATTCACGATTTCATGAAT 24609 ||||||||| || ||| ||||| ||||| Sbjct 25270 TTTCAAGCTTCTTCAATTAGTAATTTCTTGAAT 25302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136740459386300