Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq24711 116 3e-21 seq5576 109 4e-19 seq7697 95.1 9e-15 seq18044 91.5 1e-13 seq16226 91.5 1e-13 seq25505 89.7 4e-13 seq4225 89.7 4e-13 seq14351 86.0 5e-12 >seq24711 Length=27656 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| |||||||||||||| || || |||||| || || |||||||||| Sbjct 4878 CCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 4819 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| |||| || | ||||||||| ||||| |||| || ||| || |||| ||| Sbjct 4818 AAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGA 4759 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| |||||| || ||| | | || || || || || Sbjct 4758 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACT 4699 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || |||||||| || || ||||| |||||||| Sbjct 4698 TCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 4652 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || ||||| || || || ||||||||||| | | | || Sbjct 4413 AGACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGT 4354 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| |||||||| || || |||| || ||| ||||||| |||| || ||| Sbjct 4353 CCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCC 4294 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| || | | | || || |||||||| | || Sbjct 4293 TTATCCTGAATCTTCGCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTG 4234 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | |||||| ||||| ||||||||| Sbjct 4233 ATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 4195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| |||| ||| ||| || || |||||||| |||| | | | ||| Sbjct 5325 AGACGCAACACCAAGTGTAATGTGGACTCCTTCTGGATATTGTAGTCAGCCAAAGTCCGA 5266 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || ||||| || |||| || | |||||| Sbjct 5265 CCATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCC 5206 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | ||||| ||||||||| | || Sbjct 5205 TTGTCCTGGATCTTAGCCTTCACGTTGTCAATTGTGTCTGAGCTCTCCACCTCAAGAGTG 5146 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || ||||||||||| Sbjct 5145 ATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCAT 5108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||| | ||| || || ||| || || ||||||||||| | ||| | ||| Sbjct 4641 AGCCTGAGCACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGA 4582 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| || || || |||| | ||| ||||||| |||| || ||| Sbjct 4581 CCATCCTCAAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGATCCGGAGGAATACCTTCC 4522 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || ||||||||| | ||| Sbjct 4521 TTATCTTGAATCTTGGCCTTAACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTA 4462 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || || ||||| |||||||| Sbjct 4461 ATAGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 4424 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || | || ||| ||||| |||||||| |||| | | ||| Sbjct 5097 AGACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGA 5038 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| | ||| || |||| |||| || ||| Sbjct 5037 CCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCC 4978 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | || || || ||||||||| | ||| Sbjct 4977 TTATCTTGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAACTCTCCACCTCGAGGGTA 4918 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || || ||||| Sbjct 4917 ATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4880 >seq5576 Length=16168 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| |||||||||||||||| || | | ||| | || || | |||||| |||||||| Sbjct 606 CTCTTTCTGAATATTGTAATCAGCTAAAGTCCGACCATCTTCTAGCTGCTTCCCGGCAAA 665 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | |||||| |||| |||| || || ||||| |||||| || || Sbjct 666 GATTAGCCTCTGTTGGTCCGGTGGAATCCCTTCTTTGTCTTGTATCTTTGCCTTCACGTT 725 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||| | ||||| ||||| || ||||||||||| || Sbjct 726 ATCAATCGTATCAGAGCTCTCTACCTCAAGAGTAATGGTTTTCCCTGTCAAAGTTTTGAC 785 Query 48755 AAAAATCTGCATC 48767 ||| || |||||| Sbjct 786 AAAGATTTGCATC 798 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| ||||||||||| | ||| | ||| | || || | ||| ||||| || || Sbjct 834 CTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAA 893 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||||| |||||| |||| | | || |||||||| |||||| || || Sbjct 894 GATCAGTCTCTGTTGGTCCGGAGTGATCCCTTCCTTGTCTTGAATCTTGGCCTTGACGTT 953 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | ||||| ||| || || | ||||| ||||| || || || ||||| || Sbjct 954 GTCGATGGTGTCTGAGCTCTCAACTTCTAAGGTAATGGTTTTGCCAGTTAAGGTTTTCAC 1013 Query 48755 AAAAATCTGCATC 48767 ||| || |||||| Sbjct 1014 AAAGATTTGCATC 1026 >seq7697 Length=17472 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | |||||| || || || ||||||||| || ||||| || | Sbjct 10421 CCACCTCTGAGACGAAGCACCAAGTGGAGAGTAGACTCTTTTTGGATGTTGTAGTCTGCG 10480 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | |||||| |||||||| || |||| ||| ||||||| || Sbjct 10481 AGTGTGCGACCATCCTCTAGCTGCTTCCCGGCAAAGATAAGTCTCTGCTGATCCGGTGGG 10540 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| || || || ||| | | | | ||||| ||||||| Sbjct 10541 ATTCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCGATTGTGTCTGAGCTCTCCACC 10600 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || | || || ||||| |||||||| Sbjct 10601 TCCAAAGTGATTGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 10647 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||| || || || || || || | ||| | || Sbjct 10202 AGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCTGCTAGGGTGCGT 10261 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||||||||||||| || |||| ||| || || | || | ||||| Sbjct 10262 CCGTCTTCTAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCT 10321 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || || ||||||||||| || Sbjct 10322 TTGTCCTGAATCTTAGCCTTGACGTTATCAATAGTGTCAGAGCTCTCCACCTCCAAAGTG 10381 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || |||||||||||||| Sbjct 10382 ATTGTTTTACCGGTAAGGGTCTTCACAAAAATCTGCAT 10419 >seq18044 Length=6213 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || || || ||||| |||||||| | || ||||| | || || Sbjct 3096 ACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTTCGACCATCCTCG 3155 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| ||||||||||| ||||| | ||| || |||| || | || |||||||| | Sbjct 3156 AGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGA 3215 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | ||||| ||| || || | ||||| ||||| Sbjct 3216 ATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACTTCTAGGGTAATTGTTTTA 3275 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||| || ||||| ||||||||| Sbjct 3276 CCAGTAAGAGTCTTGACAAATATCTGCATC 3305 >seq16226 Length=39664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || || || ||||| || | ||| | ||| Sbjct 11603 AGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGA 11662 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| | ||| || |||| |||| ||||| Sbjct 11663 CCATCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCT 11722 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| || | | | ||||| ||| ||||| | ||| Sbjct 11723 TTGTCTTGAATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGAGTA 11782 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || |||||||| Sbjct 11783 ATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 11820 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || ||| |||||| || |||||||| || | ||| ||| | Sbjct 11831 AGACGCAACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCCAGAGTTCTA 11890 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| ||||| || |||| || ||| || |||| |||| ||||| Sbjct 11891 CCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCT 11950 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || || || |||| || Sbjct 11951 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTG 12010 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || |||||||||||||| Sbjct 12011 ATGGTCTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 12048 >seq25505 Length=75187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| |||||||| || || |||||| ||||||||||| || | | Sbjct 56734 CCTCCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCCGCT 56675 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| | || || | || ||||| ||||| |||| || ||||||||| | || Sbjct 56674 AGTGTTCGGCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCTGGTGGT 56615 Query 48660 ACGCCCTCCTTGTC 48673 | ||||| ||||| Sbjct 56614 ATTCCCTCTTTGTC 56601 >seq4225 Length=52512 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | |||||||| ||||| ||||| || || |||||||||| Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| |||| || || || ||||||||||| |||| || || || |||| ||| Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| ||| | | | || || | || ||| Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 2914 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||| | ||||| || || |||||||| Sbjct 2915 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961 >seq14351 Length=15190 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| ||||| |||| || | ||| | || || | ||| ||||| || || Sbjct 4809 CTCTTTCTGAATGTTGTAGTCAGCTAATGTCCGACCATCCTCGAGCTGTTTACCAGCGAA 4750 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 || |||| |||||| |||| ||||| | || |||||||| |||||| || ||| Sbjct 4749 GATTAGTCTCTGTTGGTCCGGTGGGATC-CCTTCCTTGTCCTGAATCTTCGCCTTCACAT 4691 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | | || || || || || | || || ||||| ||||||||||| || | Sbjct 4690 TATCAATCGTATCCGAGCTTTCGACTTCAAGAGTGATGGTTTTACCCGTCAAAGTCTTGA 4631 Query 48754 CAAAAATCTGCATC 48767 || | ||||||||| Sbjct 4630 CAGATATCTGCATC 4617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380804006969325