Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq11714 661 0.0 seq6667 587 8e-163 >seq11714 Length=14353 Score = 661 bits (732), Expect = 0.0 Identities = 722/955 (76%), Gaps = 8/955 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCAT 8345 || |||||||| ||| | |||||||| ||| || ||| |||| || || | || || Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAAC---TTCCGTTTTTAT 1332 Query 8346 TACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGG 8405 || ||||||| ||||||||||||| || || || || || || || ||||| ||| |||| Sbjct 1331 TATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 1272 Query 8406 ATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAAT 8465 |||||| | ||||| ||||| || || || ||||| || |||| | ||| || || Sbjct 1271 ATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTAT 1212 Query 8466 TGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGG 8525 ||| | || || ||||| ||||||||||| || || ||||||| ||||| |||||||| Sbjct 1211 TGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGG 1152 Query 8526 TGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCG 8585 |||||||| | || | ||| | ||||| | ||||| || | |||||||||||| Sbjct 1151 CGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCG 1092 Query 8586 TGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGC 8645 ||| ||||||||| || ||| || || |||||||||||||| ||||||||| || || Sbjct 1091 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 1032 Query 8646 TCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTC 8705 ||||||||| ||||| ||||||| ||| | |||| || |||||||||| || || Sbjct 1031 TCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTC 972 Query 8706 TGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGA 8765 ||||||||||||||| || ||||| ||||| ||||||| |||| |||| ||||||||||| Sbjct 971 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGA 912 Query 8766 GCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATC 8825 ||||||||| || |||||||| || |||||| | || || || ||||| |||||||| || Sbjct 911 GCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTC 852 Query 8826 TCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGA 8885 || ||| || ||||||||||| | || |||||| || | | || ||||| || Sbjct 851 CCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 792 Query 8886 AACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGT 8945 || || ||| || | || |||| ||||| |||||||| |||||||| |||||||| Sbjct 791 AAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGT 732 Query 8946 TGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAG 9005 || |||||||| || ||||| || |||||||| |||||||| ||| ||||||||| | Sbjct 731 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCG 672 Query 9006 AAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGG 9065 || ||||||||| | || || ||||| || || || || |||||||| || | || Sbjct 671 TTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGG 612 Query 9066 CGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGG 9125 | ||||||||||||||||| ||||| ||||| |||||||| || | | || | Sbjct 611 TATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG 552 Query 9126 ACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGA 9185 |||||||| || | || || ||||| || | ||||||| || || |||||||| Sbjct 551 TCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 492 Query 9186 AGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAG 9240 ||| ||||| ||| | || || ||||||||||| || ||||| || |||| |||| Sbjct 491 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 587 bits (650), Expect = 8e-163 Identities = 729/998 (73%), Gaps = 0/998 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || |||||||||||||| ||||||||||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || ||||| ||||| ||| | || ||| || | || ||| ||||| | Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 9885 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 ||||| | || |||||||| || ||| || | || || || ||||||||||| Sbjct 9884 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 9825 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || |||||||| || ||||| ||||| || ||||||||||| || ||||| || || || Sbjct 9824 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 9765 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | || ||||| ||||| ||||| || ||||| || |||||||||||||| Sbjct 9764 TCCGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 9705 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 ||| ||||| || |||||||| || || ||| |||||||||||||||| ||||| || Sbjct 9704 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 9645 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || ||||| || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 9644 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 9585 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || |||||||||||||| || ||| ||||||| | || || |||| || || || Sbjct 9584 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCAT 9525 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | ||||||||||| || | | | ||||||| || ||||| || ||| ||| Sbjct 9524 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 9465 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 9464 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCA 9405 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||||| Sbjct 9404 CAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 9345 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | || ||||| | | || || ||| | || || ||| Sbjct 9344 CCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGT 9285 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714 || || || || || || || || ||| | || | |||||||| ||||||||||| ||| Sbjct 9284 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTC 9225 Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774 ||||| || ||||| ||| | ||||||||| ||||||| |||||||| | || || Sbjct 9224 TATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 9165 Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 9164 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 9127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516294228600000