Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq16440 134 2e-26 >seq16440 Length=49053 Score = 134 bits (148), Expect = 2e-26 Identities = 396/605 (65%), Gaps = 13/605 (2%) Strand=Plus/Minus Query 139439 AAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGACTATCAGTGTT 139498 ||||| || ||| | ||||||||| || || | ||| | || | || | ||| Sbjct 29212 AAAGGTATCATTCTTGCAGGTGGGAGCGGTACTAGATTGTACCCCCTTACCCAAATTGTA 29153 Query 139499 TCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACAACTCTT 139558 || || || ||||||||| | || |||||||| |||||||| ||||| || || || Sbjct 29152 TCAAAGCAATTATTACCTATCTATGATAAACCCATGATTTATTATCCTTTATCAGTACTA 29093 Query 139559 ATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGATAGAAATTCTTTC 139618 || || || |||| || ||||| || || ||||||||||| |||| ||| || Sbjct 29092 ATGTTGGCGGGGATAAGAGAGATACTAATTATTTCAACACCACAAGATATTAATAAATTT 29033 Query 139619 GAGAACTTACTAGGTAACGGTTCACAATTTGGTGTTAGAATAGAATACGCTGTTCAAGAA 139678 ||| | | ||||| | |||||| ||| ||| ||| | ||| ||||||| Sbjct 29032 GAGCAAATGTTAGGTGATGGTTCAAAATATGGAATTACTCTTTCATATACTGTTCAGCCT 28973 Query 139679 AAACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGGTAAATCTAAA 139738 | || | ||| |||||||||| || | |||| ||| || || || || || ||| Sbjct 28972 TATCCAGAAGGTATAGCACAAGCATTTATAATCGCTGAGGAGTTTATTGGAAATGATAAT 28913 Query 139739 GTAGCTCTGATTTTAGGTGACAACATTTTCCATGCTTCTAATATAGATAG-ATTACTTAT 139797 |||||| | ||| | || || || || || ||| | | || | || |||||| Sbjct 28912 GTAGCTTTAATTCTTGGCGATAATATCTTTTATGGTCATGGACTA-ACAGAATTACTAGA 28854 Query 139798 GGAAGCTAATATGTCTGATAA----AAATACGATATTTGCATATCGTGTAAATGATCCTC 139853 | ||| || | || || | ||| | |||| ||| ||| |||||||| Sbjct 28853 AAAGGCTGTTAAG-AAGAAAAGGGGAGCTACAGTTTTTGGTTATTATGTCAATGATCCAG 28795 Query 139854 AGAGATATGGTGTAGTTGAATTCGATGAATATGATAACGCTG---TTTCGATCGAAGAAA 139910 || | | ||| ||||| || || ||| | | | || || || ||| |||| Sbjct 28794 AGCGTTTTGGAGTAGTAGAGTT---TGATTCTAAAAAGCATGTAATTAATATCATGGAAA 28738 Query 139911 AACCTTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATATTTCTATAATAACGATG 139970 | || | | || ||||| || || |||||| | || | ||||| ||| |||| || Sbjct 28737 AGCCAAAGGAACCAAAATCAAACTATGCAGTAACTGGTCTGTATTTTTATGATAAACGTG 28678 Query 139971 TTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGAATACGAAATATCAGATA 140030 | || ||| |||| || || || ||||| || ||||||||||| || ||| |||||| Sbjct 28677 TGATAGAAATAGCAAAAACCATAAAACCGTCTAGTCGTGGAGAATTAGAGATAACAGATA 28618 Query 140031 TTAAC 140035 | ||| Sbjct 28617 TAAAC 28613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701609948868000