Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq25811 87.8 2e-12 seq7697 87.8 2e-12 seq25505 84.2 2e-11 >seq25811 Length=7539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 28556 GCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACG--GAACCTTCA 28613 |||||| ||| |||| || | || || || ||||| ||| | || | ||| |||| Sbjct 253 GCAAATCTTTATAAAGACTCTTACAGGCAAGACCATAACC--CTTAAGGTCGAAAGTTCA 310 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| ||| ||| || || || ||| | || || || Sbjct 311 GACACTATTGACAATGTCAAGGCAAAGATCCAAGATAAGGAAGGAATCCCTCCGGACCAG 370 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || ||||||||||| ||||||||||| ||| | ||| | || || || ||| Sbjct 371 CAGAGGCTGATCTTTGCGGGTAAACAATTGGAGGATGGTTGTACTCTTGCGGACTACAAC 430 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| || ||||| ||| Sbjct 431 ATTCAGAAAGAGTCAACTCTTCAC 454 >seq7697 Length=17472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || | || ||||||||||||||| || ||| ||| Sbjct 10191 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 10132 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGATC 28671 || || | | | || | ||| || ||| ||||| || |||| | | ||| |||| Sbjct 10131 GACACAATAGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCG--GATC 10074 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | |||||||||||||| || || || ||| | |||||| | ||| | || ||||| | Sbjct 10073 AGCAGAGACTTATCTTCGCAGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACA 10014 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || || ||||| ||||| || |||| Sbjct 10013 ACATCCAGAAGGAATCGACTCTTCATTTGGT 9983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || | || || ||||| || || || ||| ||| Sbjct 10647 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACAATCACTTTGGAGGTGGAGAGCTCA 10588 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| |||||||||||| | || ||||| Sbjct 10587 GACACAATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAGGGAATCCCACCGGATCAG 10528 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||| || || || | || ||| | || | || || || ||| Sbjct 10527 CAGAGACTTATCTTTGCCGGGAAGCAGCTAGAGGATGGTCGCACACTCGCAGACTACAAC 10468 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || |||||||| |||||||| ||| |||| Sbjct 10467 ATCCAAAAAGAGTCTACTCTCCACTTGGT 10439 >seq25505 Length=75187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | || ||||||||||||| | |||||||| || |||||| | ||| Sbjct 56601 GACAAAGAGGGAATACCACCAGATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAA 56660 Query 28707 GAT--TCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTAT 28764 ||| | || |||| || || || || ||||| ||||| || ||||| || |||| | Sbjct 56661 GATGGCCGAACACTA--GCGGACTACAATATTCAGAAAGAGTCGACTCTTCATTTGGTCT 56718 Query 28765 TAAG 28768 | || Sbjct 56719 TGAG 56722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425255612530725