Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 533 4e-147
>seq11714
Length=14353
Score = 533 bits (590), Expect = 4e-147
Identities = 713/987 (72%), Gaps = 6/987 (1%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||||||
Sbjct 446 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 505
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | ||| | | |||||||| ||| | || ||||| | | || | ||
Sbjct 506 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACTATCAACTACTGA 565
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| ||||| ||||| || || |||||||| ||| || || | || ||||
Sbjct 566 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAAAGCAGTAAA 625
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 626 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 685
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
|||||||| || ||||| | || ||||| || |||||||| || ||||| ||||| ||
Sbjct 686 ACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTATAAGT 745
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193
||||||||||| || ||| | || || | || ||| ||| || || ||||| ||
Sbjct 746 TTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 805
Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253
|| | ||||| || | || ||||||||| |||| | || ||||||||
Sbjct 806 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 865
Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313
|| || || || | ||| || || || |||||||| || ||||| || || ||||||||
Sbjct 866 ACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 925
Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373
| ||| || ||||||||||| || || ||||||||||||||||| ||||| |||||
Sbjct 926 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 985
Query 18374 TCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430
|||| || || | | ||||| || || || |||||||| || || || ||||| ||
Sbjct 986 ACCAATTGGGTAGATCAAGAAA-AC--AGCAGTTGCAGCTGCAACAGGAGCTGAATATGC 1042
Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490
|||| |||||| || |||||||| || | ||||||||||||| | || ||||| ||
Sbjct 1043 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 1102
Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550
| || | || | | |||||| | ||||| |||| ||| || || ||||| ||||
Sbjct 1103 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAG 1162
Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610
||| || || | || ||||||||||||||||||||| || || | ||| || || |||
Sbjct 1163 CCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACCAATAGCTGCAGA 1222
Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670
| || | || || ||||| || || |||||||| || || | | ||| || |||||
Sbjct 1223 AGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 1282
Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730
|||||||||||||| || || || ||||||||||||| ||||| || | ||| | |
Sbjct 1283 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGA 1342
Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790
|| |||||| || | | ||||||||| | || |||||||| || | ||| || || ||
Sbjct 1343 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 1402
Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817
| || || || | ||||| ||| ||
Sbjct 1403 TTCAGTGCTGGTTATCCAGTTACAGAA 1429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151266694029850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |