Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq11714 533 4e-147 >seq11714 Length=14353 Score = 533 bits (590), Expect = 4e-147 Identities = 713/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 446 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 505 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 506 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACTATCAACTACTGA 565 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || |||||||| ||| || || | || |||| Sbjct 566 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAAAGCAGTAAA 625 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 626 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 685 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| || ||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 686 ACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTATAAGT 745 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 746 TTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 805 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 806 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 865 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || || || | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 866 ACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 925 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 926 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 985 Query 18374 TCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| || || | | ||||| || || || |||||||| || || || ||||| || Sbjct 986 ACCAATTGGGTAGATCAAGAAA-AC--AGCAGTTGCAGCTGCAACAGGAGCTGAATATGC 1042 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || ||||| || Sbjct 1043 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 1102 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | |||||| | ||||| |||| ||| || || ||||| |||| Sbjct 1103 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAG 1162 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | || ||||||||||||||||||||| || || | ||| || || ||| Sbjct 1163 CCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACCAATAGCTGCAGA 1222 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || ||||| || || |||||||| || || | | ||| || ||||| Sbjct 1223 AGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 1282 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | Sbjct 1283 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGA 1342 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || |||||||| || | ||| || || || Sbjct 1343 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 1402 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 1403 TTCAGTGCTGGTTATCCAGTTACAGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151266694029850