Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq6667 567 9e-157 seq11714 536 2e-147 seq4916 91.5 2e-13 seq7508 89.7 7e-13 >seq6667 Length=26159 Score = 567 bits (628), Expect = 9e-157 Identities = 736/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 9112 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 9171 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || || ||||| ||| Sbjct 9172 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 9231 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 9232 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 9291 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| || || | | || | | ||| |||| | ||| | || || ||||| Sbjct 9292 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 9351 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 9352 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 9411 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 9412 AAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 9471 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 9472 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 9531 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | ||||| | ||| || || ||||||||||| |||||||| | Sbjct 9532 GCGCATAGCAGGGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 9591 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| || || |||||||| Sbjct 9592 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 9651 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 9652 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 9711 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 9712 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGCCGCAATTGAACGGATCGAGCA 9771 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || | || || || ||||||||||| |||||| Sbjct 9772 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAA 9831 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 9832 GCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 9891 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || ||||| || | ||| Sbjct 9892 AGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTTAAAAAA 9951 Query 102550 TTAGCACCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || |||||| | | ||||| || | || || |||||||| ||||| |||| Sbjct 9952 TTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTTACAAAG 10008 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || || | ||| ||||| | || | ||| ||| ||||| || | ||| ||| Sbjct 10009 GTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGACCA 10068 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||| ||||| |||||||| || | | ||||||||||| || ||||| Sbjct 10069 GACCAACCTACAAAAACAAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 10124 >seq11714 Length=14353 Score = 536 bits (594), Expect = 2e-147 Identities = 699/972 (72%), Gaps = 6/972 (1%) Strand=Plus/Plus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 || ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 434 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 493 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | || || || |||| Sbjct 494 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACT 553 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| ||||| || || |||||||| ||||||||||||| ||| Sbjct 554 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACC 613 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 614 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 673 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 || |||||||| || ||||| |||||||| || || || ||||||||||| ||||| Sbjct 674 AGAATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 733 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 ||||| || || ||||| ||||||||||| ||||||| | || ||||||| |||| Sbjct 734 AATGTTATAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 793 Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | || | || |||| ||||| ||||||||||| || || | Sbjct 794 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGG 852 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 | || ||||| || || || ||||| | |||||| || |||||||| |||||||| || | Sbjct 853 AGCCGCCGAATACACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 912 Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700 | || ||||| || | ||| ||||||| || || || || || | ||||||| |||| | Sbjct 913 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 972 Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760 | || |||||||||| ||||||| |||||| || || | ||||| |||||||||| Sbjct 973 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAG 1032 Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820 | || ||||| ||| ||||| || ||||| ||||||||| | | ||||||||||| Sbjct 1033 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCAC 1092 Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 | |||||||| | | |||| | ||||| | || | |||| ||||||| | Sbjct 1093 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGC 1152 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 |||| || ||||| ||||||| ||||| |||||||| || || || || || | ||||| Sbjct 1153 CGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACCAA 1212 Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998 | || || || || |||| || ||||| || || || ||||| ||||| | || || Sbjct 1213 TAGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1270 Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058 |||| || ||||||||||| || || ||||| || ||||| || || | ||| || | Sbjct 1271 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1330 Query 104059 GATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAAC 104118 || || | ||||| | ||| | || |||||||||| ||||| ||||| |||| Sbjct 1331 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1390 Query 104119 ATAGAGACGGTT 104130 || ||||| || Sbjct 1391 GTAAAGACGATT 1402 >seq4916 Length=5169 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 ||||| ||||| || |||| ||| |||| || | |||| ||| || || || || Sbjct 3709 GGGTAAGCCACACAAGTCAAGACATAACCATTCTCAAAGTGATGGTCCTCAAGGAACGAA 3650 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| || || || | || || ||||||||||| ||||| |||||||||||| Sbjct 3649 CCATCAGACTGGTCAACGTTGCCTTTCTCGATCTTACCAGCGCAAGTGGAACACGCACCA 3590 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 || | || || ||||||| ||||| ||||| || ||||| || || | || ||||| Sbjct 3589 GCTCTGCAAGAGTAAGGCAAGTCAACTCCTGCCTCTTCAGCTGCATCCAAGATGTATTGG 3530 Query 103004 TCATC 103008 ||||| Sbjct 3529 TCATC 3525 >seq7508 Length=48272 Score = 89.7 bits (98), Expect = 7e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| ||||||||||| || || || || || ||| | ||| |||| | ||| ||||| Sbjct 20654 ACATCAGAAGTTGGGTAAGCGACACATGTTAGGACATAGCCTTCTTCCATTTGGTCGTCG 20713 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 |||| ||| ||| || || || || | || || | | ||||| || || || Sbjct 20714 TCCAAGAAGCTTTGGTCGGACTGGTCAACGGAGCCAGAGACGACTTTACCGGCGCAGCTA 20773 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || | ||||||||| || || ||||||| || | || ||||| ||||| ||||| Sbjct 20774 GAGCAAGAACCAGCACGGCATGAGTAAGGCAAGTCGATTCCGGCTTCTTCAGCTGCGTCG 20833 Query 102992 AG 102993 || Sbjct 20834 AG 20835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633285733077000