Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq11714 526 6e-145 >seq11714 Length=14353 Score = 526 bits (582), Expect = 6e-145 Identities = 715/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| || ||||||||||| || || || |||||||| || || | Sbjct 436 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 495 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 496 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACTAT 555 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | ||||||||||||||| | || | Sbjct 556 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTA 615 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||| | Sbjct 616 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 675 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 |||| || || ||||||||||| ||||| | || |||||||| || |||||||| |||| Sbjct 676 AATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 735 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819 | || ||||| ||||| ||||| || || ||||||| | || || | | ||| | Sbjct 736 TGTTATAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 795 Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879 | || || | || | || || |||| | ||| ||||||||| || | | Sbjct 796 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGC 855 Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 | || ||||| || || || || | ||||||||| || ||||||||||| |||||||||| Sbjct 856 CGCCGAATACACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 915 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||||||| || | ||| ||||||| || || || || || | |||||| ||||||||| Sbjct 916 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 975 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || || || |||| || || | | ||| |||||||| ||||| || |||||||| | Sbjct 976 AACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTG 1035 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || | ||| || || || | |||||||||||||| || | Sbjct 1036 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1095 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| | || |||| | ||||| | || | |||| | |||||||||| Sbjct 1096 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 1155 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| ||||||||||||| | ||||||||||| |||||||| || || | || || | Sbjct 1156 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACCAATAG 1215 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | |||| | ||| ||||| || || ||||| || || | || || |||| Sbjct 1216 CTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 1275 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| || |||||||||| Sbjct 1276 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 1335 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || | || |||| ||| ||| | || ||||| | || || |||||||| | ||| Sbjct 1336 AAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 1394 Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||||| || | ||| ||| | |||| ||| || Sbjct 1395 AGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146158040269500