Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq11714 540 1e-148 seq6667 363 2e-95 seq25013 116 4e-21 seq21422 104 3e-17 >seq11714 Length=14353 Score = 540 bits (598), Expect = 1e-148 Identities = 701/966 (73%), Gaps = 2/966 (0%) Strand=Plus/Plus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || || |||| ||| ||||||||||| ||||||||||| ||||| | |||||||||||| Sbjct 431 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 490 Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT 124152 ||||||||| | ||| || | ||| | || |||| |||| || | | ||| | Sbjct 491 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTG 550 Query 124153 AGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGAT 124212 | |||||| ||||||||||| || ||||||||||| | |||||| ||||| |||| || Sbjct 551 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAAT 610 Query 124213 ACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACT 124272 ||| | || || ||||| | || ||| || || || | |||| |||||| || | | Sbjct 611 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 670 Query 124273 TCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGC 124332 | || |||||||| |||||| || ||||| | || ||||| ||||| || || || Sbjct 671 ACGAGAATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGC 730 Query 124333 TACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTG 124392 ||| ||||| || |||||||||||||||||||| | ||||| | || || || | Sbjct 731 TACAATGTTATAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATT 790 Query 124393 CTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAA 124452 ||||| ||||| ||||| | | ||| || || | ||||||||||| || |||| Sbjct 791 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 850 Query 124453 AGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512 || || ||||| | || ||||| ||| |||||| || || ||||| |||||||| || Sbjct 851 GGAGCCGCCGAATACACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 910 Query 124513 CTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572 ||| || ||||| || | |||||||||||||||||| ||||| || || ||||||||||| Sbjct 911 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 970 Query 124573 AGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGG 124632 ||| || || ||||||| |||||| | ||||| ||||| |||||| | || || Sbjct 971 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGG 1030 Query 124633 TGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTG 124692 |||||||| |||||| |||||||||||||| || | | | | |||||||||| Sbjct 1031 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1090 Query 124693 TCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACC 124752 | ||||| || | | ||||| | ||||| | || | | | ||||||||| Sbjct 1091 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1150 Query 124753 ACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCC 124812 || || || | |||||||||||| | ||| ||||||||||||||||| || || | || Sbjct 1151 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACC 1210 Query 124813 GATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AG 124871 ||||| || | |||| || ||||| || || || ||||| || || ||||| || Sbjct 1211 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTA-AAGAAGAG 1269 Query 124872 AACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAA 124931 | || | || ||||| | || || || ||||| || ||||| || ||||| ||||| | Sbjct 1270 ATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGA 1329 Query 124932 CGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAA 124991 || ||| | | ||| || | |||| || ||||| | |||||||||||| |||| Sbjct 1330 TAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 1389 Query 124992 CATAAA 124997 |||| Sbjct 1390 TGTAAA 1395 >seq6667 Length=26159 Score = 363 bits (402), Expect = 2e-95 Identities = 703/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 9108 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 9167 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 9168 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 9227 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 9228 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 9287 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | ||||| || || | || | || |||| | ||| | || || || Sbjct 9288 TAGGTTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTAC 9347 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || ||||| Sbjct 9348 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 9407 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 9408 CCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 9467 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 9468 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 9506 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || | || |||| || || || Sbjct 9507 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGGGCGGCGCCCAGTACACCGGCGAC 9566 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | || | ||| | Sbjct 9567 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 9626 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||||||||| Sbjct 9627 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 9686 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || |||| | || || || || | |||||||||||| ||| || || Sbjct 9687 ATAAATTAGGAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 9746 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | || || || | |||||||| | | ||| |||||||| | | | Sbjct 9747 AGGCCGCAATTGAACGGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 9806 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || | || ||||| ||| ||||| || | ||| |||||||| || Sbjct 9807 GAAAGCGCCGTGGAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAA 9866 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 9867 ATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAAAGAATGTGCTAAACTATTAGCAGG 9926 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || || || || ||||| || || || || | ||| ||| || | ||||| Sbjct 9927 AGTCGAAACGGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATG 9986 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 9987 AGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGC 10046 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || ||||| || || ||| |||||| Sbjct 10047 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACAAAGCGGTCCCTCCGTAACCA 10106 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 10107 GTCATCCATAATATCAAA 10124 >seq25013 Length=69919 Score = 116 bits (128), Expect = 4e-21 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| || || ||||| || || ||||||||||| || ||||| || Sbjct 47561 TGAGCAGTACAGATGTTGCTAGTGGCTTTATCCCTCCTAATATGCTGTTCCCTAGTCTGC 47620 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | || || || || | || |||| || ||| | ||| || | Sbjct 47621 ATCGCCATACGCAAAGCTGGCTTCCCAAAGGAATCAACACTAAC--ACCAATAATCCTCC 47678 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| |||||||||||| | || || || || || |||||||||||||| || | Sbjct 47679 CAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAAAACGCAGCATGAGGACCACCAT 47738 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCA 139541 | ||||| |||| |||||||||||| ||| ||| |||||||| Sbjct 47739 AACCCATCGGAACACCAAACCTTTGAGCGGAACCAACAACAATATCA 47785 Score = 100 bits (110), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || || |||||||| |||| ||||| | || ||||| | || ||||| || Sbjct 48100 CATTGCTTCAGCAGCTGCAGTACCTTCGTCTAACAACGAAGCGTTAGACATAGGTAAACC 48159 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || || || | ||| ||| |||| | || | || | ||||| ||||| || Sbjct 48160 AGTGAGATCAGTAATCATCGTCTGGAAATTAAGCAACGACTCAAGCCTTCCTTGAGAGAT 48219 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC-AAGA 140027 |||||||||||| ||||| || || |||||| ||||||||| |||| Sbjct 48220 CTCAGCTTGATAAGGAGTATACTGAGTATACCAAGCAGGATTCTCTAAGA 48269 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/111 (80%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCA 138218 |||||||| | ||||| ||| |||||||| ||||| | |||||||| ||||||||| Sbjct 45654 AAATGGTGCCAAATGTT--GCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCA 45711 Query 138219 TGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 || ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 45712 TGAGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 45762 >seq21422 Length=25677 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| |||||||| || |||||| |||| |||| | || ||||| | || || | ||| Sbjct 2324 CATCGCCTCTGCAGCAGCAGTTCCTTCGTCTAGCAAGGACGCGTTCGACATAGGGAGTCC 2265 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || || || | ||| |||||||| | | || ||| | || ||| ||||| || Sbjct 2264 AGTGAGATCAGTAATTACCGTCTGGTAATTAAGCAGAGATTCAAGTCGTCCTTGAGAAAT 2205 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| ||||| || || |||||| ||||||||| Sbjct 2204 CTCAGCTTGATAAGGAGTATATTGAGTATACCAAGCAGGATTCTC 2160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578790141513000