Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq11714 547 9e-151 seq6667 542 4e-149 seq6679 127 3e-24 seq27581 125 1e-23 seq7508 98.7 1e-15 >seq11714 Length=14353 Score = 547 bits (606), Expect = 9e-151 Identities = 717/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 26724 CTCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAA 26783 |||| ||||||| || || | || || || || || || | ||| || || || || | Sbjct 437 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 496 Query 26784 TCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATC 26843 ||||| ||||||||| | || || |||||||| || | || || || || ||| Sbjct 497 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACTATC 556 Query 26844 AATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAG 26903 || || || || ||||| |||||||| || || ||||||||||| ||| | ||| | Sbjct 557 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 616 Query 26904 TGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGA 26963 || || ||||| || || || || ||||| || || | |||||| || || ||||| || Sbjct 617 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 676 Query 26964 GTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGAT 27023 |||||||| ||||||||| |||||||| || || || || ||||| || || || || Sbjct 677 ATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 736 Query 27024 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGT 27083 ||| || || ||||||||||| ||||| | ||||| | || || ||| |||| || Sbjct 737 GTTATAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 796 Query 27084 CGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCC 27143 || || | || | ||| || |||| || ||||||||| || || || || Sbjct 797 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 856 Query 27144 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGC 27203 |||||||| || || || || | |||||| || ||||||||||| || ||||| || || Sbjct 857 GCCGAATACACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 916 Query 27204 CTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAA 27263 ||||||||||| ||| |||| |||||||||||||| || ||||||||| |||| || || Sbjct 917 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 976 Query 27264 AGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGA 27323 | |||||||| | || |||| | ||| || ||| | ||||| || || ||||| || Sbjct 977 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1036 Query 27324 ATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCC 27383 |||||| ||| ||||| ||||||||||| | ||| | |||||||||||||| || Sbjct 1037 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1096 Query 27384 CATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTT 27443 ||||||| | | || | | ||||| | || | |||| ||||||| ||||| Sbjct 1097 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1156 Query 27444 ATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGC 27503 || | ||| ||||| | ||||| ||||||||||||||||| || || | ||| || || Sbjct 1157 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACCAATAGC 1216 Query 27504 ATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGC 27563 ||| | || | || ||||| ||||| || ||||| || || | ||| || |||| Sbjct 1217 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1276 Query 27564 AACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||| |||||||||||||| |||||||| || || || || || |||||||||| ||| || Sbjct 1277 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1336 Query 27624 GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 | |||||| | || | || |||||||||| ||||| ||||| |||| || | Sbjct 1337 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1396 Query 27684 ACGGTTGTTAGTTGATGTCACCCACTCACAGAA 27716 ||| || | ||| || | ||| | |||||| Sbjct 1397 ACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1429 >seq6667 Length=26159 Score = 542 bits (600), Expect = 4e-149 Identities = 731/1018 (72%), Gaps = 0/1018 (0%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 9107 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 9166 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| || |||| Sbjct 9167 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 9226 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | |||||| || ||||| || || || || || ||||| |||| Sbjct 9227 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 9286 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | ||| || || | | |||| || | | ||| | ||| | || || | Sbjct 9287 GTAGGTTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTA 9346 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||||| Sbjct 9347 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 9406 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 |||||||||| || || || ||||| ||||| || || || | ||||| | | || | Sbjct 9407 ACCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 9466 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 9467 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 9526 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | ||||||| ||| || |||||||||||||| || |||| Sbjct 9527 GAATAGCGCATAGCAGGGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGT 9586 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| ||||| | ||| | || || ||||| |||| Sbjct 9587 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 9646 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| || || || | ||||| || ||||| ||||| | Sbjct 9647 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAA 9706 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGAC 24045 | || |||||||| |||||||| || || || ||||| || || || | | || | Sbjct 9707 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGCCGCAATTGAACGGATC 9766 Query 24046 GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAA 24105 | || |||||||| |||||||||||||||||||| | ||| || || ||||||||||||| Sbjct 9767 GAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAA 9826 Query 24106 CAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGAC 24165 |||| | ||| || || || | ||| ||| || ||| || ||||| | ||||||| Sbjct 9827 CAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGAC 9886 Query 24166 CCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAA 24225 |||| |||| | | |||||| | | | | |||||| ||||| || || || || | Sbjct 9887 CCCACAGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTTA 9946 Query 24226 GAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAA 24285 ||| || ||| || | |||||||||||| | |||||| || ||||| || |||| Sbjct 9947 AAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAA 10006 Query 24286 AAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTC 24345 | | ||| || || | |||||| || | |||| ||| ||| |||| || | || | Sbjct 10007 AGGTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGAC 10066 Query 24346 CAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 |||||||||| ||||| |||||||| |||| | |||||| |||| || ||||| Sbjct 10067 CAGACCAACCTACAAAAACAAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 10124 >seq6679 Length=30138 Score = 127 bits (140), Expect = 3e-24 Identities = 253/375 (67%), Gaps = 0/375 (0%) Strand=Plus/Plus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || ||||| ||||| ||| | || ||| |||||||| || |||||||| || Sbjct 17633 ATCAAAGCAGGAAGCACATGAGAATTCTCGGGGTGGAAATTATCGTTCGGACCATAAAGA 17692 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099 || || ||||| ||||| |||| || || ||| | || || ||||||||| Sbjct 17693 TTCGTGGGCATTCCGGAGATCGCATCCCATTGATGCTGAATCCGATAAGCTTGACACATC 17752 Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTC 47159 || || || |||||||| ||||| || || | || ||| | |||||||| |||||| | Sbjct 17753 TTAATCCCTGCAATCTTGGCAATCGCGTACCATTCGTTAGTCGGTTCAAGCGGACCAGTG 17812 Query 47160 ATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCA 47219 | ||| |||| || || || | ||||| || |||||||| || |||||| Sbjct 17813 AGAAGAGCGGATTCCGGTATTGGCTGAGGAGCAAATTTGGGGTAAATGCAAGAGGAACCA 17872 Query 47220 AGAAATAAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAATGATGTTTGATTGAATC 47279 || || | ||| ||||| || ||| || ||||| || || | || | ||| || Sbjct 17873 AGGAAGAGAAGCTTCTTCACGCCATGTGTATAAGCAGAGTGGATCACATTGGTTTGGATT 17932 Query 47280 ATCAAATTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACC 47339 | ||| || ||||| | | || || || |||||| ||||||||| || Sbjct 17933 TGGAGATTGACACCAATGAAATCAGCAGGGTATGTGTTGTTAGCATGAATACCACCAACT 17992 Query 47340 TTTGCAGCAGCAAGA 47354 || || ||||| ||| Sbjct 17993 TTAGCTGCAGCGAGA 18007 >seq27581 Length=27377 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||| ||||| |||||||||| || ||||| ||| |||||||||| ||| Sbjct 7253 TCTTCTTTGTGAGTCTCAATGGTAACATCAGAGGTAGGATAAGCAGCACAAGTGAGAACA 7312 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 || ||||| |||| || |||||||| | ||| ||| || ||| || || | ||| Sbjct 7313 AATCCTTCAGCAATCTGTTCATCATCGAGGAAACTCTGGTCTGATTGATCGACAGATCCA 7372 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || ||||||||||| ||||| | ||| ||||| |||||||| ||||| Sbjct 7373 GACTTAACTTTACCTGCACAGCTAGAACATGAACCAGCACGGCAAGAGTAAGGCAAATCG 7432 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || |||| || ||||| || |||| ||| Sbjct 7433 ATTCCTGCTTCTTCAGCTGCGTCGAGGACGTA 7464 >seq7508 Length=48272 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | |||||||| | |||||||||||||| || || ||||| || || ||| Sbjct 20630 TCTTCTTTGTGGGTTTCAATGGTGACATCAGAAGTTGGGTAAGCGACACATGTTAGGACA 20689 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | |||||||| ||||| || || |||||||| || || ||||| || | ||| Sbjct 20690 TAGCCTTCTTCCATTTGGTCGTCGTCCAAGAAGCTTTGGTCGGACTGGTCAACGGAGCCA 20749 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || | ||||| || || || || | ||| ||||| || ||||| || || Sbjct 20750 GAGACGACTTTACCGGCGCAGCTAGAGCAAGAACCAGCACGGCATGAGTAAGGCAAGTCG 20809 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || |||| || ||||| || |||| ||| Sbjct 20810 ATTCCGGCTTCTTCAGCTGCGTCGAGGACGTA 20841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665255029983000