Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6542 154 2e-32 seq4131 150 2e-31 seq13097 107 2e-18 >seq6542 Length=27459 Score = 154 bits (170), Expect = 2e-32 Identities = 284/415 (68%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 175235 TTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAG 175294 ||||||| ||||| ||| | |||||||||| || | ||||||| |||||| || Sbjct 10820 TTGTGGAGTTTCTGAAGAAGCCCGAGAGATTCACTGCAGTTGGTGCCCGGATCCCGAAAG 10879 Query 175295 GCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGG 175354 | | || || ||| || ||||||||||| ||||| | || ||| || || | Sbjct 10880 GTGTTCTCCTTATTGGTCCTCCTGGTACGGGAAAAACCCTTTTGGCAAAAGCTATTGCTG 10939 Query 175355 GTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||||| | ||| || ||| || ||| | | | ||||| ||||||||||| | Sbjct 10940 GTGAAGCTGGTGTGCCTTTCTTCTCCATCTCCGGTTCTGAGTTTGTTGAGATGTTTGTCG 10999 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| ||| || |||||||| || | | ||| ||||| || || | Sbjct 11000 GTGTTGGTGCCTCAAGAGTCCGCGATCTTTTCAAGAAAGCCAAGGAAAACGCTCCCTGCA 11059 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 ||||||| ||||||| |||||||| || || | |||| | | | || |||| Sbjct 11060 TTGTCTTTGTTGATGAAATTGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 11116 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| ||||| || ||||||||||| |||| Sbjct 11117 GAGGTAATGATGAAAGAGAACAGACTCTTAATCAGCTACTAACTGAGATGGATGGATTTG 11176 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | | || || ||| | || |||| || ||||| | | || || ||||| Sbjct 11177 AAGGTAACACCGGTATTATTGTAGTTGCTGCAACTAACAGAGCAGACATTCTTGA 11231 >seq4131 Length=60598 Score = 150 bits (166), Expect = 2e-31 Identities = 304/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||| | ||| | || ||||| | || ||||||||||||||| ||| Sbjct 21517 GTGGAGTTTTTAAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCCAAGATCCCGAAAGGT 21458 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || |||||||| || ||| | | || ||||||||| ||| Sbjct 21457 GTTCTCCTTGTTGGTCCTCCTGGTACGGGTAAAACCTTGTTGGCAAAAGCCATCGCTGGT 21398 Query 175357 GAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGG 175415 ||| | ||| || ||| | || | ||| | | | ||||| ||||||||||| || Sbjct 21397 GAAGCCGGTGTACCCTTCTTTTCAAT-CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGG 21339 Query 175416 TGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTAT 175475 ||| |||||| |||||| || ||||| || ||| ||| |||||| || || || Sbjct 21338 TGTTGGTGCCTCAAGGGTACGTGATCTTTTCAAAAAAGCCAAGGAAAATGCTCCCTGCAT 21279 Query 175476 TGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCC 175532 ||| || ||||||| || ||||| || || | |||| | | |||| |||| Sbjct 21278 TGTTTTTGTTGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---GG 21222 Query 175533 AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 || ||||| || ||||||||||| ||||||| || || || ||||||||||| ||||| Sbjct 21221 AGGTAATGATGAAAGAGAACAAACTCTTAATCAGCTCCTGACTGAGATGGATGGTTTTGA 21162 Query 175593 CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGC 175652 | | ||||| || | || |||| || || || | | || || ||||| ||| Sbjct 21161 GGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCGC 21102 Query 175653 CCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | || | || || |||||||| || Sbjct 21101 TTTGCTGAGACCAGGACGTTTTGACCG 21075 >seq13097 Length=20508 Score = 107 bits (118), Expect = 2e-18 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| ||||| || | || |||| | || || || || || || ||| Sbjct 15862 CCGGGAACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCCGGAGAGGCAGGAGTGCCTTTC 15803 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || |||| | | || || ||| | || |||||||| ||||| |||||| Sbjct 15802 TTCTCTTGTGCTGCGTCTGAGTTCGTCGAGCTTTTCGTTGGTGTTGGTGCGTCTAGGGTT 15743 Query 175435 CGCGATCTCTTTGAAATCGCCCG--CGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| | || ||||| ||| |||||||| ||||||||||||| Sbjct 15742 AGGGATTTGTTTGAGAAGGCGAAATCGAAAGC--ACCTTGTATTGTTTTCATTGATGAGA 15685 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGT--GGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | ||| | | |||||| || | | | |||||| |||||||| Sbjct 15684 TTGATGCTGTTGGTAGGCAGAGAGGAGCTGGTATGGGAGGT--GGAAATGATGAGAGAGA 15627 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| || | || ||||||||||| ||| Sbjct 15626 ACAGACGATTAATCAGCTCTTGACTGAGATGGATGGTTTT 15587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596355021372000