Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 625 3e-174
seq6667 544 9e-150
seq8694 95.1 1e-14
seq5 95.1 1e-14
>seq11714
Length=14353
Score = 625 bits (692), Expect = 3e-174
Identities = 735/994 (74%), Gaps = 0/994 (0%)
Strand=Plus/Minus
Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827
|||||| | ||| | |||||||| | || ||||| || | || ||||||||| |
Sbjct 1430 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 1371
Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887
|||||| || || | ||| | |||||| | || || |||| ||||| ||||||||
Sbjct 1370 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1311
Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947
|| || || || || || || |||||||| || |||| ||||| | || || |||||
Sbjct 1310 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1251
Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007
|| || || ||||| || |||| |||| || |||||| | || || || || ||
Sbjct 1250 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAAT 1191
Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067
||||||||| ||||| |||| |||||||| || ||||| ||||||| |||| ||||
Sbjct 1190 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1131
Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127
| ||||| | |||| | | || |||||||||||||||||||| || |||
Sbjct 1130 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1071
Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187
||| ||||||||||| ||||| |||||| || ||||| || || || ||||| | |||
Sbjct 1070 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1011
Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247
|| ||| | | || || | |||||||| ||||| ||||||| ||||| || |||||
Sbjct 1010 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 951
Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307
||| || || ||||||| ||| | || ||||| ||||||||||| ||||| ||||| ||
Sbjct 950 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 891
Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367
|| || ||| | ||||| || || ||||| || ||| | |||||||||||||| ||
Sbjct 890 ATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 831
Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427
||||| |||||| | | | || || || || |||| ||||| || | ||
Sbjct 830 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 771
Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487
||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| || ||
Sbjct 770 TTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGG 711
Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547
|| |||||||| ||||| ||| |||||||| || || || || || |||||| | ||
Sbjct 710 CCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 651
Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607
|| ||||| || || || || ||||| || || | || | ||| ||||| |||||
Sbjct 650 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 591
Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667
||| || |||||||| |||||||| || | ||||| |||| || || || | || ||
Sbjct 590 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 531
Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727
||||| ||| || ||||||| ||| || |||||||||||||||||||| ||||| ||
Sbjct 530 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 471
Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGAG 166761
||||||||||| || ||||| ||||||| ||||
Sbjct 470 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437
>seq6667
Length=26159
Score = 544 bits (602), Expect = 9e-150
Identities = 733/1019 (72%), Gaps = 4/1019 (0%)
Strand=Plus/Minus
Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073
|||||| | | ||||||||| | ||||| || ||||||||||| || ||||||||
Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065
Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133
|| | || ||||| ||| ||| ||||| | || |||||| | || || || || ||
Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005
Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTC 167191
|| || ||||||||||||||| | || || | ||| | || ||| || |||
Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCC--TATTTAGAAGGTTGCAATTTTT 9947
Query 167192 TTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGG 167251
| || || || ||| ||||| || || | | | |||||||| | | || ||||
Sbjct 9946 TAACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGG 9887
Query 167252 GTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTG 167311
|||||||| | ||||| ||||| | ||| ||| | || || || ||||||||||
Sbjct 9886 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTG 9827
Query 167312 TGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC 167371
| || |||||||| || || || | || ||||| ||| | || || |||||||||||||
Sbjct 9826 TTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 9767
Query 167372 GCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 167431
| || | || || || ||||| || || ||||||||||| |||||||| || |
Sbjct 9766 GATCCGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 9707
Query 167432 TTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCG 167491
|| || ||||| | ||||| || |||||| | ||||||||||| || || |
Sbjct 9706 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 9647
Query 167492 GAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGA 167551
| || || || || || |||||| ||||||| ||||||| || || || |||||| |||
Sbjct 9646 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 9587
Query 167552 ATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCC 167611
| ||||||||||||||||| || || ||| | ||||| | || |||| | || || |
Sbjct 9586 ACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTC 9527
Query 167612 ATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGG 167671
|||||| ||| ||||| |||||||| | |||||||||||| ||||| || || |
Sbjct 9526 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 9467
Query 167672 CATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGT 167731
| || | | ||||| | ||||| |||||||||||||| || || ||||| || ||||
Sbjct 9466 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGT 9407
Query 167732 CTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCG 167791
| || ||||| || ||||||| ||| ||||| ||| | ||||||||||||||||| |
Sbjct 9406 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 9347
Query 167792 TTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTC 167851
| || || | || | |||| | |||| | | || || ||| | || || |
Sbjct 9346 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTAC 9287
Query 167852 GTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTT 167911
|||| || || |||||||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct 9286 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 9227
Query 167912 TCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATC 167971
||||||||||||| || ||| | || |||||| |||| || ||| | || || ||||
Sbjct 9226 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 9167
Query 167972 AACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030
| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || |||
Sbjct 9166 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 9108
>seq8694
Length=35224
Score = 95.1 bits (104), Expect = 1e-14
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 42 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 101
Query 18179 GGTTCAAATCCTACCTGGGGAG--TTGTT 18205
||||| |||||||| ||||||| |||||
Sbjct 102 GGTTCGAATCCTACTTGGGGAGATTTGTT 130
>seq5
Length=4504
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 4246 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 4187
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 4186 GGTTCGAATCCTACTTGGGGAG 4165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561046126110000
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