Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq11714 533 4e-147 >seq11714 Length=14353 Score = 533 bits (590), Expect = 4e-147 Identities = 714/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 437 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 496 Query 40583 ACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 ||| || | | ||||| || ||||||||||||| ||| || || | | || Sbjct 497 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACTATC 556 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 |||||||| ||||| || || |||||||| ||||| |||||||| || ||||| | Sbjct 557 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 616 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 617 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 676 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 ||||||||| |||||||||||| || | || ||||| ||||| || |||||||| || Sbjct 677 ATTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 736 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||||||||| || |||| || || || | || || | || |||||| |||| || Sbjct 737 GTTATAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 796 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| |||| || | ||||| || | | || ||||||||| ||| | | || Sbjct 797 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 856 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || ||||| | ||| || ||||||||||| ||||||||||| || || Sbjct 857 GCCGAATACACCCGCTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 916 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 917 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 976 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | ||| || | ||||| ||||| || |||| | ||||||| Sbjct 977 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1036 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 1037 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1096 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || ||||| || | ||||||||| | ||||| |||| ||| || |||||||| Sbjct 1097 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1156 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||||||| || || | | | ||||||||||||||||| ||||| | || || || Sbjct 1157 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAAACCAATAGC 1216 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| | |||| | || || || ||||||||||| ||||| | | || || || Sbjct 1217 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1276 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| |||||||| || || || || || || ||||| || || Sbjct 1277 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1336 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 | | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 1337 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1396 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || || ||||| || | ||||||||| || Sbjct 1397 ACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143653296440850