Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 165 1e-35
seq24711 134 2e-26
seq14351 100 4e-16
seq5576 100 4e-16
seq7697 98.7 1e-15
seq8442 96.9 5e-15
seq18065 95.1 2e-14
seq12325 89.7 8e-13
seq4225 89.7 8e-13
seq28288 87.8 3e-12
>seq18099
Length=159039
Score = 165 bits (182), Expect = 1e-35
Identities = 371/553 (67%), Gaps = 9/553 (2%)
Strand=Plus/Minus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||| || |||||| ||| | |||||| ||||| || ||||| |||||| || |||
Sbjct 20655 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTT 20596
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
|| || ||||| | || | ||| || ||||| || ||||| ||| || ||| |||
Sbjct 20595 AAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAG 20536
Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334
|||||||| ||||| || |||||||||| | | |||||| || ||| || | | ||
Sbjct 20535 AATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAA--TGT-TTGA--GATC 20481
Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
| ||||| | ||||||| ||| | ||| || || | || || |
Sbjct 20480 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTG 20421
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
|| || |||| |||| |||||||| |||||| || || ||||||| | | |||||
Sbjct 20420 CACGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAAT 20361
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
|||| || ||||| || | || ||||| || || || | || || | | || ||||
Sbjct 20360 ACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGG 20301
Query 18513 GATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571
||| | || | || |||| | | | || || || || |||||||
Sbjct 20300 AGACTTGTACATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGAT 20242
Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631
| ||||| || || | || | ||| ||||| || ||| || |||||||| | |
Sbjct 20241 GCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCC 20182
Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691
|| ||| | |||| ||| ||||| |||||||| | ||||| || |||| ||||||
Sbjct 20181 CAGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 20122
Query 18692 TGTTTGTACATTT 18704
| ||||||||||
Sbjct 20121 TTCTTGTACATTT 20109
>seq24711
Length=27656
Score = 134 bits (148), Expect = 2e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || ||||| || || |||||||| || ||||| ||| ||
Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || ||||| || || ||||| ||||| || || ||||| || ||
Sbjct 4712 GACACTATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 4771
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||| ||||||||||| ||||| ||||||||| | ||||| ||
Sbjct 4772 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 4831
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| |||||| | || |||||||| |||||
Sbjct 4832 ATCCAGAAAGAGTCTACTCTTCATTTGGTGTT 4863
Score = 102 bits (112), Expect = 1e-16
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || |||| || |||||||| || || ||||| | || || || ||||
Sbjct 4880 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTGGAGAGTTCT 4939
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| |||||||| || || |||||||| ||||| || || || || ||
Sbjct 4940 GACACTATTGACAACGTGAAGGCAAAGATCCAAGATAAGGAAGGTATTCCACCGGACCAG 4999
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || ||||| | |||||| ||||||||||| |||
Sbjct 5000 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGAT 5035
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||| ||||||||||| | || || || ||||
Sbjct 4424 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACTATTACTCTTGAGGTGGAGAGTTCT 4483
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || || || || |||||||| ||||| || ||||| || ||
Sbjct 4484 GATACCATTGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCTCCGGATCAG 4543
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||||| || || ||||| || || ||| | ||| | | ||||| |||
Sbjct 4544 CAGAGGTTGATTTTCGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCGGATTACAAT 4603
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| || ||| | || |||||| | |||
Sbjct 4604 ATCCAGAAGGAGTCTACTCTTCATCTTGTG 4633
>seq14351
Length=15190
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | ||||| || || || || | || |||||| |||
Sbjct 4164 ATGCAGATCTTTGTCAAGACTCTTACTGGTAAGACCATAACCCTTGAGGTCGAAAGTTCA 4223
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || |||||||| ||||| || ||||| || ||
Sbjct 4224 GACACCATTGATAACGTCAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCGGACCAG 4283
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| ||||| | ||| ||||||||||| |||||| | ||| || | ||||| ||
Sbjct 4284 CAAAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTCTAGCGGATTACAAC 4343
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| | || || ||||| || | || || ||||| |||
Sbjct 4344 ATCCAGAAGGAGTCAACTCTCCATTTGGTTCTCAGGTTGAGAGGAGGT 4391
>seq5576
Length=16168
Score = 100 bits (110), Expect = 4e-16
Identities = 136/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| | ||||| ||||| || ||| | || |||||| ||
Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || |||||||||||||| || ||||| || |||
Sbjct 1193 GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCAA 1134
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||||||||| ||||| || ||| | | ||| | | ||||| |
Sbjct 1133 CAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACA-- 1076
Query 156003 ATATCCAAA 156011
|||||||||
Sbjct 1075 ATATCCAAA 1067
>seq7697
Length=17472
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||||||||| | |||||| | |||||||| || || || | || ||||| |||
Sbjct 11331 ATGCAAATATTCGTGAAAACACTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 11272
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || ||| || || || || ||||| || ||||| || ||
Sbjct 11271 GACACTATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 11212
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | || ||||| ||||| |||||| | | ||||| |||| || |||
Sbjct 11211 CAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACTTTGGCAGACTACAAT 11152
Query 156003 AT 156004
||
Sbjct 11151 AT 11150
>seq8442
Length=60656
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||||||| || | |||||| | ||||| ||||||||||| |||||||| || ||
Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| |||| || || || |||||||| ||||| || |||||||| |
Sbjct 43972 AGACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||| || | || | || ||||| || ||||| || |||| | |||||| ||
Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCTTGGAGATTACAA 43853
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
||| || || | || || ||||| ||| || | || ||||| ||
Sbjct 43852 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGG 43805
>seq18065
Length=21122
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || || | || || ||||| ||||| ||||||| || ||
Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
| | ||| || || || | || |||||||||||||| || ||||| || ||
Sbjct 12467 TACACCATTGACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 12526
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | ||||||||| |||||||| ||| | |||||| | ||||||||
Sbjct 12527 CAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTTAGCGGATTATAAC 12586
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| ||||| | || |||||||| |||
Sbjct 12587 ATTCTAAAAGAATCAACCCTTCATTTGGTG 12616
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || | | || || ||||| ||||| ||||||| || ||
Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || ||| || || |||||||||||||| || ||||| || ||
Sbjct 14940 GATACCATTGACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 14999
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| ||||| || | ||||||||| || || || ||| |||| || | ||||| ||
Sbjct 15000 CAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAA 15058
>seq12325
Length=88458
Score = 89.7 bits (98), Expect = 8e-13
Identities = 114/155 (74%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953
|||||| || || || ||||| ||||||| | ||| |||| ||||||||| ||||
Sbjct 4161 AAACGTCAAGTTGAAGATCCAAGAGAAAGAAGAAGTCCCTTCAGACCAACAAAGACTGAT 4220
Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-- 156011
| ||||||||| |||||||||||| | | |||||| | ||||| | | |||||||
Sbjct 4221 CTTTGCCGGTAAACAGCTCGAAGATGGCTGTACTTTAGCTGATTACA--ACATCCAAATG 4278
Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGG 156046
|| | || || || || || | || ||||||||
Sbjct 4279 GAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGG 4313
>seq4225
Length=52512
Score = 89.7 bits (98), Expect = 8e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880
||||||| || || | ||||| | || || || || || || |||| || ||| ||
Sbjct 2963 AAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTT 2904
Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940
| || | || || |||||| || || ||||| || ||||| || || || || |
Sbjct 2903 CGGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCGGACC 2844
Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000
| ||| | ||||| | ||||||||| || | ||||| ||||| | | ||||| |
Sbjct 2843 AGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGAAGAACACTCGCTGATTACA 2784
Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
| || ||||| | ||||||||||| || || |||||||||| ||
Sbjct 2783 ACATCCAGAAAGAATCAACGCTTCATTTGGTTCTACGATTAAGAGGAGG 2735
>seq28288
Length=9629
Score = 87.8 bits (96), Expect = 3e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| | ||||| ||||||||||| ||||||| || | ||
Sbjct 4619 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAACTCA 4678
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| || || || ||||| || ||||| || ||||| || ||
Sbjct 4679 GACACTATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 4738
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | || ||||| || ||||| ||| | || ||| | || || ||
Sbjct 4739 CAGAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGTCGGACATTAGCGGACTACAAC 4798
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| |||||| | || |||||
Sbjct 4799 ATTCAGAAAGAGTCAACTCTTCA 4821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731608754790000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |