Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq18099 165 1e-35 seq24711 134 2e-26 seq14351 100 4e-16 seq5576 100 4e-16 seq7697 98.7 1e-15 seq8442 96.9 5e-15 seq18065 95.1 2e-14 seq12325 89.7 8e-13 seq4225 89.7 8e-13 seq28288 87.8 3e-12 >seq18099 Length=159039 Score = 165 bits (182), Expect = 1e-35 Identities = 371/553 (67%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| || |||||| ||| | |||||| ||||| || ||||| |||||| || ||| Sbjct 20655 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTT 20596 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | || | ||| || ||||| || ||||| ||| || ||| ||| Sbjct 20595 AAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAG 20536 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 |||||||| ||||| || |||||||||| | | |||||| || ||| || | | || Sbjct 20535 AATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAA--TGT-TTGA--GATC 20481 Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 | ||||| | ||||||| ||| | ||| || || | || || | Sbjct 20480 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTG 20421 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 || || |||| |||| |||||||| |||||| || || ||||||| | | ||||| Sbjct 20420 CACGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAAT 20361 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| || ||||| || | || ||||| || || || | || || | | || |||| Sbjct 20360 ACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGG 20301 Query 18513 GATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 ||| | || | || |||| | | | || || || || ||||||| Sbjct 20300 AGACTTGTACATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGAT 20242 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | ||||| || || | || | ||| ||||| || ||| || |||||||| | | Sbjct 20241 GCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCC 20182 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || ||| | |||| ||| ||||| |||||||| | ||||| || |||| |||||| Sbjct 20181 CAGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 20122 Query 18692 TGTTTGTACATTT 18704 | |||||||||| Sbjct 20121 TTCTTGTACATTT 20109 >seq24711 Length=27656 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || || |||||||| || ||||| ||| || Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || ||||| || || ||||| ||||| || || ||||| || || Sbjct 4712 GACACTATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 4771 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| ||||||||||| ||||| ||||||||| | ||||| || Sbjct 4772 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 4831 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || |||||||| ||||| Sbjct 4832 ATCCAGAAAGAGTCTACTCTTCATTTGGTGTT 4863 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || |||||||| || || ||||| | || || || |||| Sbjct 4880 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTGGAGAGTTCT 4939 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||||| || || |||||||| ||||| || || || || || Sbjct 4940 GACACTATTGACAACGTGAAGGCAAAGATCCAAGATAAGGAAGGTATTCCACCGGACCAG 4999 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| ||||||||||| ||| Sbjct 5000 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGAT 5035 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||||||||| | || || || |||| Sbjct 4424 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACTATTACTCTTGAGGTGGAGAGTTCT 4483 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || |||||||| ||||| || ||||| || || Sbjct 4484 GATACCATTGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCTCCGGATCAG 4543 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| || || ||||| || || ||| | ||| | | ||||| ||| Sbjct 4544 CAGAGGTTGATTTTCGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCGGATTACAAT 4603 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || |||||| | ||| Sbjct 4604 ATCCAGAAGGAGTCTACTCTTCATCTTGTG 4633 >seq14351 Length=15190 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| || || || || | || |||||| ||| Sbjct 4164 ATGCAGATCTTTGTCAAGACTCTTACTGGTAAGACCATAACCCTTGAGGTCGAAAGTTCA 4223 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || |||||||| ||||| || ||||| || || Sbjct 4224 GACACCATTGATAACGTCAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCGGACCAG 4283 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | ||| ||||||||||| |||||| | ||| || | ||||| || Sbjct 4284 CAAAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTCTAGCGGATTACAAC 4343 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || || ||||| || | || || ||||| ||| Sbjct 4344 ATCCAGAAGGAGTCAACTCTCCATTTGGTTCTCAGGTTGAGAGGAGGT 4391 >seq5576 Length=16168 Score = 100 bits (110), Expect = 4e-16 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| ||||| || ||| | || |||||| || Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || |||||||||||||| || ||||| || ||| Sbjct 1193 GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCAA 1134 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||| ||||| || ||| | | ||| | | ||||| | Sbjct 1133 CAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACA-- 1076 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 1075 ATATCCAAA 1067 >seq7697 Length=17472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | |||||| | |||||||| || || || | || ||||| ||| Sbjct 11331 ATGCAAATATTCGTGAAAACACTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 11272 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || || || || ||||| || ||||| || || Sbjct 11271 GACACTATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 11212 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || ||||| ||||| |||||| | | ||||| |||| || ||| Sbjct 11211 CAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACTTTGGCAGACTACAAT 11152 Query 156003 AT 156004 || Sbjct 11151 AT 11150 >seq8442 Length=60656 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||| || | |||||| | ||||| ||||||||||| |||||||| || || Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||| || || || |||||||| ||||| || |||||||| | Sbjct 43972 AGACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | || | || ||||| || ||||| || |||| | |||||| || Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCTTGGAGATTACAA 43853 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || || | || || ||||| ||| || | || ||||| || Sbjct 43852 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGG 43805 >seq18065 Length=21122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | || || ||||| ||||| ||||||| || || Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 | | ||| || || || | || |||||||||||||| || ||||| || || Sbjct 12467 TACACCATTGACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 12526 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||||||| |||||||| ||| | |||||| | |||||||| Sbjct 12527 CAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTTAGCGGATTATAAC 12586 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| | || |||||||| ||| Sbjct 12587 ATTCTAAAAGAATCAACCCTTCATTTGGTG 12616 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || | | || || ||||| ||||| ||||||| || || Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || |||||||||||||| || ||||| || || Sbjct 14940 GATACCATTGACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 14999 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||||| || | ||||||||| || || || ||| |||| || | ||||| || Sbjct 15000 CAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAA 15058 >seq12325 Length=88458 Score = 89.7 bits (98), Expect = 8e-13 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953 |||||| || || || ||||| ||||||| | ||| |||| ||||||||| |||| Sbjct 4161 AAACGTCAAGTTGAAGATCCAAGAGAAAGAAGAAGTCCCTTCAGACCAACAAAGACTGAT 4220 Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-- 156011 | ||||||||| |||||||||||| | | |||||| | ||||| | | ||||||| Sbjct 4221 CTTTGCCGGTAAACAGCTCGAAGATGGCTGTACTTTAGCTGATTACA--ACATCCAAATG 4278 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGG 156046 || | || || || || || | || |||||||| Sbjct 4279 GAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGG 4313 >seq4225 Length=52512 Score = 89.7 bits (98), Expect = 8e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 ||||||| || || | ||||| | || || || || || || |||| || ||| || Sbjct 2963 AAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTT 2904 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 | || | || || |||||| || || ||||| || ||||| || || || || | Sbjct 2903 CGGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCGGACC 2844 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000 | ||| | ||||| | ||||||||| || | ||||| ||||| | | ||||| | Sbjct 2843 AGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGAAGAACACTCGCTGATTACA 2784 Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | || ||||| | ||||||||||| || || |||||||||| || Sbjct 2783 ACATCCAGAAAGAATCAACGCTTCATTTGGTTCTACGATTAAGAGGAGG 2735 >seq28288 Length=9629 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| ||||||||||| ||||||| || | || Sbjct 4619 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAACTCA 4678 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || ||||| || ||||| || ||||| || || Sbjct 4679 GACACTATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 4738 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || ||||| || ||||| ||| | || ||| | || || || Sbjct 4739 CAGAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGTCGGACATTAGCGGACTACAAC 4798 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 4799 ATTCAGAAAGAGTCAACTCTTCA 4821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731608754790000