Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4131 122 3e-22 seq25126 114 4e-20 seq6542 113 1e-19 seq17966 105 2e-17 seq28467 96.9 1e-14 seq13097 93.3 1e-13 >seq4131 Length=60598 Score = 122 bits (134), Expect = 3e-22 Identities = 310/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 || || |||||||| ||||| || | ||| | || | | | || ||| |||||| Sbjct 21114 ATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGTGTTACCCTCAAAACCATCC 21173 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || | | |||||||| |||||||| ||||||||||| ||||| || Sbjct 21174 ATCTCAGTCAGGAGCTGATTAAGAGTTTGTTCTCTTTCATCATT---ACCTC------CA 21224 Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||| ||||| |||| |||| | || Sbjct 21225 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAAACAATGCA 21283 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||||| | || || || | || | ||| | || || |||| ||| || Sbjct 21284 GGGAGCATTTTCCTTGGCTTTTTTGAAAAGATCACGTACCCTTGAGGCACCAACACCGAC 21343 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | | || ||| | |||| ||||| || || Sbjct 21344 AAACATCTCAACAAACTCAGAACCCGAGATTGAAAAGAAGGGTACACCGGCTTCACCAGC 21403 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | || | |||| | || ||||| || ||||| || || | | ||||| || || Sbjct 21404 GATGGCTTTTGCCAACAAGGTTTTACCCGTACCAGGAGGACCAACAAGGAGAACACCTTT 21463 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || || ||| | | | | ||||||| |||||||||| || || | ||| Sbjct 21464 CGGGATCTTGGCACCAACCGCAGTGAACCTCTCAGGCTTCTTTAAAAACTCCACCACTTC 21523 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | || || ||||| ||| || |||||| ||||||| Sbjct 21524 CATGAAATCTTGCTTGGCTTCATCGACTCCAGCAACATCATCAAAAGT 21571 >seq25126 Length=35928 Score = 114 bits (126), Expect = 4e-20 Identities = 277/412 (67%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| |||||||| || || || || || || | ||| || ||| | Sbjct 28444 TAAACCCATCCATTTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTC 28503 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| | || | || ||||||||||| || |||||||| | Sbjct 28504 CTCCTAAA----CCGGTTC-CTC-TCATTCTCCCTACAGCATCAATCTCATCAATGAACA 28557 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 | ||| || |||| |||| || | ||| || || ||||| || | || || Sbjct 28558 CTATACAAGGTGAATTACTCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGAAGC 28612 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||||| ||||||| |||| |||| || || || | || | | | || | ||| Sbjct 28613 TCCAACACCAACAAACATCTCTATGAACTCTGATCCAGACAATGAGAAAAACGGAACACC 28672 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| |||| | |||| || ||||| || ||||| |||||||| ||| Sbjct 28673 GGCTTCTCCGGCTATTGCCTTGGCCAAGAGAGTCTTTCCGGTTCCTGGTGGTCCGGTTAA 28732 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 | || || ||||| | ||| || || || || | ||||||| || | || || | Sbjct 28733 CAAGACGCCTTTTGGGATTTTAGCTCC-TAAGGCTGAGAATTTCTCTGGAGTTTTCAAGA 28791 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| || || || || | || | || || || || |||||||||||| Sbjct 28792 ATTCAACGATCTCTTCGAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 28843 >seq6542 Length=27459 Score = 113 bits (124), Expect = 1e-19 Identities = 316/474 (67%), Gaps = 26/474 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCA 288945 || || |||||||| ||||| || | ||||| |||| |||| | ||| ||||||| Sbjct 11225 ATGTCTGCTCTGTTAGTTGCAGCAACTACAATAATAC---CGGTGTTACCTTCAAATCCA 11169 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| |||| | |||||||| || ||||| ||||||||||| ||||| Sbjct 11168 TCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATT---ACCTC----- 11117 Query 289006 TCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 || || | || | |||| ||| ||||||||||||||||||| |||| || | | Sbjct 11116 -CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAAT 11059 Query 289062 ACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 || |||| |||| | || ||| ||| | || | || | || || |||| | Sbjct 11058 GCAGGGAGCGTTTTCCTTGGCTTTCTTGAAAAGA--TCGCGGACTCTTGAGGCACCAACA 11001 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 || ||| |||| || ||||| |||||| |||| | | || | ||| | ||| ||||| Sbjct 11000 CCGACAAACATCTCAACAAACTCAGAACCGGAGA-TGGAGAAGAAAGGCACACCAGCTTC 10942 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || | || | |||| ||| || || || || ||||| || || | ||||| Sbjct 10941 ACCAGCAATAGCTTTTGCCAAAAGGGTTTTTCCCGTACCAGGAGGACCAATAAGGAGAAC 10882 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 || || || | || ||| | | | || |||| || |||| | ||| || || Sbjct 10881 ACCTTTCGGGATCCGGGCACCAACTGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCAC 10822 Query 289299 AATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| | || | ||||| |||||| ||| || |||||| |||| || Sbjct 10821 AACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 10768 >seq17966 Length=8585 Score = 105 bits (116), Expect = 2e-17 Identities = 218/318 (69%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || ||||| || || | | ||| | |||||| || | Sbjct 3254 ACCAATCGCATCGATCTCATCAATAAATATAATGCTCGGTGCCGCTTGTCTAGCCTCTTG 3313 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || | ||| || | || | ||||| ||||||| |||| || | || || ||| | Sbjct 3314 GAACAAATGTCTCACCCTCGACGGTCCAACACCAACAAACATCTCCATGAAATCTGAACC 3373 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||||| | || ||| | ||| || ||| ||||| || | || | ||| |||| Sbjct 3374 GGATA-TCGACAGAAACGGCACACCTGATTCCCCTGCGGTAGCTTTTGCTAAAAGAGTCT 3432 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||||||||| || || |||| || | || ||||| | ||| || |||| | | Sbjct 3433 TTCCTGTTCCAGGCGGACCAACTAAAAGTGCACCTTTTGGAATTTTAGCACCCA--AATC 3490 Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| |||| ||| |||| || || | ||||| |||| || ||| | ||| ||||| Sbjct 3491 TTCATACTTCTTTGGGTTCTTCAAGAAATGTACAAATTCCATAATTTCTTGTTTAGCCTC 3550 Query 289326 ATCACATCCTGCTACATC 289343 |||||||| || ||||| Sbjct 3551 CTCACATCCAGCAACATC 3568 >seq28467 Length=106825 Score = 96.9 bits (106), Expect = 1e-14 Identities = 170/247 (69%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| |||||||||||||| | ||| || || | | Sbjct 81267 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCA 81326 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||||||||| || ||||| || || ||||||| |||| || || Sbjct 81327 GCATCGGAACAATACCATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGC 81386 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | ||||||||| | ||||||||||| | ||||| || || || || | Sbjct 81387 GGATATTATGAATCGAAACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTT 81446 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 | | |||| | || || || ||| |||||| | ||| | | ||| |||| || Sbjct 81447 TCAACGTATCATATATTCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTAC 81506 Query 156286 TTAATTG 156292 |||| || Sbjct 81507 TTAACTG 81513 >seq13097 Length=20508 Score = 93.3 bits (102), Expect = 1e-13 Identities = 267/408 (65%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||||| || ||||| || ||||||||| ||| Sbjct 15587 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 15646 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || | || |||||| | | |||||||||||||||| || ||||||||| Sbjct 15647 TCCCATACCA--------GCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAA 15698 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | ||| || | || | |||| | |||| || || || || | || || ||| Sbjct 15699 ACAATACAAGGTGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCA 15758 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGC 289175 | |||||| | | || || || ||||| || | || || | ||| | || ||| Sbjct 15759 ACACCAACGAAAAGCTCGACGAACTCAGACGCAG-CACAAGAGAAGAAAGGCACTCCTGC 15817 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || || || || || || |||| ||| ||||| || ||||| || || || | | | Sbjct 15818 CTCTCCGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGGAGGACCAACAAGCAA 15877 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 | ||| || || | || || || || | || || ||||| |||| || || || Sbjct 15878 ACATCCTTTAGGAATCTTAGCACCTAAAGCTGTGTACTTATCAGGATTCTTCAAGAAATC 15937 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||||| | ||| || || | |||| |||||| ||||| Sbjct 15938 AACAACTTCCTGTAACTCAAGCTTAGCTTGATCAGCTCCTGCAACATC 15985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471274970747175