Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq11714 556 1e-153 seq6667 520 1e-142 seq27581 138 1e-27 >seq11714 Length=14353 Score = 556 bits (616), Expect = 1e-153 Identities = 696/952 (73%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 157622 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 157681 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1328 Query 157682 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 157741 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 1327 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1268 Query 157742 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 157801 || | || || ||||| || || || ||||| || | || |||| || |||||| Sbjct 1267 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1208 Query 157802 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 157861 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 1207 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1148 Query 157862 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 157921 |||| |||| | || | ||||| | ||||| | | || ||||| |||||| Sbjct 1147 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1088 Query 157922 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 157981 ||||||||| | |||| | |||||||| || ||||| ||| |||||||| ||||| Sbjct 1087 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1028 Query 157982 GTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGAT 158041 || || || ||| ||||||| ||| | |||| || | |||||||| ||| || ||| Sbjct 1027 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 968 Query 158042 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 158101 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 967 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 908 Query 158102 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158161 ||||| ||||||||||| || || ||| | || || || || |||||||| || || || Sbjct 907 AACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTA 848 Query 158162 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 158220 || ||||||||| || | || |||| || | | || | ||||| || |||| Sbjct 847 TTTAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAA 789 Query 158221 AGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGC 158280 || || || | ||||||| ||||| ||||| ||||| || |||||||| || || Sbjct 788 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGC 729 Query 158281 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC 158340 || ||||| || || || || |||||||| ||||| ||| |||||||| || ||||| Sbjct 728 TGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTC 669 Query 158341 CTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGT 158400 || || |||||| | || || ||||| || || || || ||||| || || | || | Sbjct 668 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 609 Query 158401 CTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCA 158460 ||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| Sbjct 608 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 549 Query 158461 GGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGT 158520 || || || | || || ||||| ||| | | ||||| ||| |||||||||||||| Sbjct 548 AGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 489 Query 158521 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 158572 ||||||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 488 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 520 bits (576), Expect = 1e-142 Identities = 719/1006 (71%), Gaps = 0/1006 (0%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || |||||||||||||| || |||||||| ||| | || || Sbjct 10112 GATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 10053 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 10052 CCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 9993 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || || | |||||||||||| | || ||| || ||| | || || || || Sbjct 9992 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 9933 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 ||||| |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 9932 TCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 9873 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || |||| || ||||| ||| | || || | ||| |||||| || |||||||| Sbjct 9872 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 9813 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTATC 159665 || ||||| |||| ||||| ||| | ||||| |||||||| || || | || | Sbjct 9812 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTG 9753 Query 159666 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTC 159725 || ||||| ||||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 9752 CGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTA 9693 Query 159726 ATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATC 159785 || || ||| | ||||| || ||||||| || || || ||||| || || || || Sbjct 9692 ATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 9633 Query 159786 TTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATG 159845 ||| ||||| | | || | ||||| ||||| || ||||| || || || || |||||| Sbjct 9632 TTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 9573 Query 159846 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTA 159905 |||||||| || ||| |||| || | || || || | || || ||||| | ||||||| Sbjct 9572 ATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGTA 9513 Query 159906 GAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACT 159965 || || || | | ||||||||| || |||||||| || || ||| | ||||| Sbjct 9512 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 9453 Query 159966 CAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 160025 |||| || || ||||| || |||||||| || ||||| || ||||| || ||||| || Sbjct 9452 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGGG 9393 Query 160026 ATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGT 160085 |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | ||| Sbjct 9392 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGT 9333 Query 160086 CTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTC 160145 | |||| || |||| | | ||||| ||| | || || ||||| || || ||| Sbjct 9332 TTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTC 9273 Query 160146 GTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAAC 160205 || || || ||| | ||||| |||||||| ||||||||||| ||||| || ||||| Sbjct 9272 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAAT 9213 Query 160206 ATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAAC 160265 || || || |||||||| | ||||| ||| |||| || ||||| || ||||||||| Sbjct 9212 ATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 9153 Query 160266 TTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| ||||| || || || | || | || ||||| ||||||| Sbjct 9152 CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 9107 >seq27581 Length=27377 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || |||||||| |||||||||||| | ||| | ||||||||| ||||||||| Sbjct 7464 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 7405 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 | || ||| |||||||||||| || |||||| |||| ||||| || ||| Sbjct 7404 TCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTCGATCAATCAGACCAGAGT 7345 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| |||||||| | |||||||||||| || |||| || ||||| || Sbjct 7344 TTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 7285 Query 158930 TCTGAT 158935 |||||| Sbjct 7284 TCTGAT 7279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548177156583000