Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_021856.1 Length=155631 Score E Sequences producing significant alignments: (Bits) Value seq7810 879 0.0 seq20250 794 0.0 seq4902 149 6e-31 >seq7810 Length=38048 Score = 879 bits (974), Expect = 0.0 Identities = 949/1247 (76%), Gaps = 21/1247 (2%) Strand=Plus/Plus Query 12561 TTGAACTACCCCCACTTAACACCCTTACGGGTTGTTTGAAGTGAGGGATTCCTACGAACT 12620 ||||||||||||||||| | ||| ||| | ||||||||||||||||| | | Sbjct 13954 TTGAACTACCCCCACTTT---CACTTC---GTT--TAGAAGTGAGGGATTCCTAAGTAAA 14005 Query 12621 CCGTTCTATCGAACAGATATTTAGTAGGCTAACCCCGTAGCCCCTACGGTTAGAAGTCTT 12680 |||||||||||| ||| | ||||||||||||| || || | |||||||||| ||| Sbjct 14006 GAGTTCTATCGAACTCTAATTGATTAGGCTAACCCCGCAGTCCTTGCGGTTAGAAGCCTT 14065 Query 12681 ATCGCTTCATTTTTAATATTTTGTCCTGCGTTAATGTCTCTATCGTGATGTGTTCCGCAA 12740 ||||||||||| || | ||| | ||||||||| || ||||| || ||||| | ||| Sbjct 14066 ATCGCTTCATTCTTTAGATTGATACTTGCGTTAATATCCCTATCATGGTGTGTACGACAA 14125 Query 12741 GATGGGCAATCCCATTCACGAAGATTTAGATTCTTAACGTCTTTGTTTTTGTATCCGCAA 12800 || || || ||||||||||| || |||||||| ||||||||||| |||| ||||| ||| Sbjct 14126 GAAGGACAGTCCCATTCACGTAGGTTTAGATTTTTAACGTCTTTATTTTGATATCCACAA 14185 Query 12801 CACGAACACAATTG---AGAACTTGCAAACGTTTTAGATACCGCAACAACTTGTTTGCCG 12857 || ||||| ||||| ||| ||||| ||||| ||||| ||| ||||||||||| Sbjct 14186 CAAGAACATAATTGGCTGGAA---GCAAATGTTTTCGATACGACAATGACTTGTTTGCCA 14242 Query 12858 TACCGTTTCGCTTTGTATTCAAGCATCGTTCTGAATTGATACCAAGATACTTCACTAATA 12917 |||| ||| ||||| ||||| | ||| |||| || || ||||||||||||||||||| Sbjct 14243 TACCATTTTGCTTTATATTCCAACATGGTTCGAAACTGTGACCAAGATACTTCACTAATT 14302 Query 12918 GATTTGGCTAACTTATGATTCTTTAGCATATTACTTACTTGCAAATCTTCAATACCGATT 12977 | ||| ||||||||||||||||||| |||||| |||||||||||| || |||||||| Sbjct 14303 GCTTTTGCTAACTTATGATTCTTTAACATATTCGATACTTGCAAATCCTCTATACCGATA 14362 Query 12978 ACATCGTGGTTTTTGATGATTTCGGTAGAGATTTTTTGCAAGTAATCTGTTCTTGCATTG 13037 ||||||||| ||||||||||||| || |||||||| | ||||||||| |||| ||||| Sbjct 14363 ACATCGTGGCTTTTGATGATTTCAGTTGAGATTTTGTCTAAGTAATCTTTTCTAGCATTT 14422 Query 13038 GTGATTTTTTCGTGAATACGTGCAACTTTAATTCGTTGCTTATTCCAATTAGAACCGCCT 13097 | || | ||| ||||| | || ||||| | |||||| |||||||| |||| ||| Sbjct 14423 GATATGTATTCATGAATTCTAGCTACTTTTACTCGTTGTTTATTCCAGCGAGAAGATCCT 14482 Query 13098 TTTGTGCGTCTGGAAAGAATACGTTGTGCGTTTGCTAATTTTTCTTCAAGTTTACGAAAC 13157 || | | ||| ||||||| ||| ||||| || || || || ||||| | | || || Sbjct 14483 TTCATTCTTCTAGAAAGAACACGCTGTGCTTTCGCCAACTTATCTTCTAATGATCGGAAA 14542 Query 13158 CACTTTGGATTTTCGTATGGTGTTCCATCTGAAAGAGTTGCGAAGGTTTTTAATCCAACA 13217 |||| |||||||| || |||||||||||||| | | | ||||| ||||| ||| ||| Sbjct 14543 AACTTCGGATTTTCATAGGGTGTTCCATCTGACAAAATGGCGAAATCTTTTAGTCCTACA 14602 Query 13218 TCTATACCAATAGAAGAACCTGTTTTTTCTAATGGTTGCACCTCTGTTTCTACAAGAATG 13277 ||||| ||||| ||||| |||||| | | ||| || |||||||| || | | Sbjct 14603 TCTATCCCAATGTAAGAATGTGTTTTCGGAAGTTCTTGTACTTCTGTTTCAACTAATAGT 14662 Query 13278 GAAACAAAATATTTACCACTCGGATTACGTCTAACAGTAGCGTTAAGAATACGACCATGT 13337 || ||||||||| ||||| || || ||||||||||| || || | |||||| || | | Sbjct 14663 GACACAAAATATCTACCAGAAGGGTTTCGTCTAACAGTCGCATTTACAATACGTCCCTCT 14722 Query 13338 ACTTCACGACTTTTTGCAAAGCGAACAAGACCAAGTTTCGGCAATTTAATTTTGTTGCCT 13397 |||||||||||||| | ||| |||||||| || ||||| ||||| || |||||||| ||| Sbjct 14723 ACTTCACGACTTTTGGGAAATCGAACAAGGCCTAGTTTGGGCAACTTTATTTTGTTCCCT 14782 Query 13398 ACAATGGCAATGTTTCCATTCGTGTGTTTTGTTGTATAAGATTGAACCTTATTCTTTTTG 13457 |||| |||||| ||| |||| || |||||||| ||||||||||| || |||||||| ||| Sbjct 14783 ACAACGGCAATATTTTCATTTGTTTGTTTTGTGGTATAAGATTGTACGTTATTCTTCTTG 14842 Query 13458 GACTTGAAGCGAGGTGCATCGTTTTGCTTCTTAAAGAAGCGAGAATAAGCATCAGCAAGG 13517 || ||||| || || ||| ||||| || || || || || | ||| ||||| |||||| Sbjct 14843 GATTTGAAACGCGGGGCACTATTTTGTTTTTTGAAAAATCGTGTATATGCATCCGCAAGG 14902 Query 13518 TTTTTGAGTGAAGATTGAATCGCAATGCTGTCCACCTCTTTTAACCAAACTAATTCTTTC 13577 || | || || ||||||||||| || ||||| ||||| | |||||| || |||||| Sbjct 14903 TTGCGAACAGACGACTGAATCGCAATACTATCCACTTCTTTGAGCCAAACGAACTCTTTC 14962 Query 13578 TTTAATTGG--GTTAATTGAGAAGAACACGAATTGTAAGTCAAACCTTTTCCTGTTGCCT 13635 || | ||| | | || | ||| || | | || || ||||||||||| || | | Sbjct 14963 TTCA--TGGCAGGAAGTTTGGCAGAGCATGTACCATATGTTAAACCTTTTCCAGTCTCTT 15020 Query 13636 TATAAGTATCGTTCCATTTTGCGAGGAAATGATTGAATACAAAACGAGAACAACCGATTG 13695 | || | | | |||| | |||||||||||||||||||| ||||||||||| || | Sbjct 15021 TGTATGCGTGATCCCATAGGGATAGGAAATGATTGAATACAAAGCGAGAACAACCTATCG 15080 Query 13696 TTTTAGCAATCAGTATTTCTTGTTCTTTGCTTGGATAGATACGAAATTTATATGCTTTAT 13755 |||| ||| || ||| ||||| ||| |||||||||||||||| ||||| ||||||| Sbjct 15081 TTTTGTTAATTAGAATTGCTTGTGCTTGATTTGGATAGATACGAAACTTATAAGCTTTAT 15140 Query 13756 TGACCAACATGACTTTCACCTCCTTGTGTGT-TATGA-TATACATAT 13800 | | | ||| ||||||||| | | || ||||| ||| ||||| Sbjct 15141 TAATTATCATTTGATTCACCTCCATTTCGGTATATGACTAT-CATAT 15186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 14006 ATCCCTTGTCCGAAGGCGATTCATCTCCCACCTACTCACTGGGCTACG-CCCTTCACGTT 14064 ||||||||| ||||| | ||||||||||||||||||||||| || | ||||||||| | Sbjct 15258 ATCCCTTGTTCGAAGCCAGTTCATCTCCCACCTACTCACTGGACTGTGACCCTTCACGCT 15317 Query 14065 CCTTGAGGTGGGAGTATTCTCGCCTATTTTTGATaaaaaa 14104 | |||||| ||||| |||| | ||| |||||||||| Sbjct 15318 CTTTGAGGAAGGAGTCTTCTTGGCTA-AAATGATAAAAAA 15356 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/133 (74%), Gaps = 10/133 (8%) Strand=Plus/Plus Query 12561 TTGAACTACCCCCACTTAACACCCTTACGGGTTGTTT-GAAGTGAGGGATTCCTACGAAC 12619 ||||||||||||||||| |||| | |||| ||||||||| ||||||| | | Sbjct 20363 TTGAACTACCCCCACTT-------TTACT--TCGTTTAGAAGTGAGGAATTCCTAAGTAA 20413 Query 12620 TCCGTTCTATCGAACAGATATTTAGTAGGCTAACCCCGTAGCCCCTACGGTTAGAAGTCT 12679 |||| ||||||| || | |||||| ||||| || || |||||||||||| || Sbjct 20414 AGAGTTCAATCGAACTCTAGTTGATTAGGCTGCCCCCGCAGTCCTTACGGTTAGAAGCCT 20473 Query 12680 TATCGCTTCATTT 12692 ||| ||||||||| Sbjct 20474 TATTGCTTCATTT 20486 >seq20250 Length=26292 Score = 794 bits (880), Expect = 0.0 Identities = 910/1225 (74%), Gaps = 50/1225 (4%) Strand=Plus/Plus Query 12560 TTTGAACTACCCCCACTTAACACCCTTACGGGTTGTTT-GAAGTGAGGGATTCCTACGAA 12618 |||||||||||||||||| |||| |||||| ||||||||||||||||| | | Sbjct 6157 TTTGAACTACCCCCACTT-------TTACT--TTGTTTAGAAGTGAGGGATTCCTAAGTA 6207 Query 12619 CTCCGTTCTATCGAACAGATATTTAGTAGGCTAACCCCGTAGCCCCTACGGTTAGAAGTC 12678 |||||||||||| ||| | ||||||||||||| || || | |||||||||| | Sbjct 6208 AAGAGTTCTATCGAACTCTAATTGATTAGGCTAACCCCGCAGTCCTTGCGGTTAGAAGCC 6267 Query 12679 TTATCGCTTCATTTTTAATATTTTGTCCTGCGTTAATGTCTCTATCGTGATGTGTTCCGC 12738 ||||||||||||| || | ||| | ||||||||| || ||||| || ||||| | | Sbjct 6268 TTATCGCTTCATTCTTTAGATTGATGCTTGCGTTAATATCCCTATCATGGTGTGTACGAC 6327 Query 12739 AAGATGGGCAATCCCATTCACGAAGATTTAGATTCTTAACGTCTTTGTTTTTGTATCCGC 12798 |||| || || ||||||||||| || |||||||| ||||||||||| |||| ||||| | Sbjct 6328 AAGAAGGACAGTCCCATTCACGTAGGTTTAGATTTTTAACGTCTTTATTTTGATATCCAC 6387 Query 12799 AACACGAACACAATTG---AGAACTTGCAAACGTTTTAGATACCGCAACAACTTGTTTGC 12855 | || ||||| ||||| ||| ||||| ||||| ||||| ||| |||||||||| Sbjct 6388 AGCAAGAACATAATTGGCTGGAA---GCAAATGTTTTCGATACGACAATGACTTGTTTGC 6444 Query 12856 CGTACCGTTTCGCTTTGTATTCAAGCATCGTTCTGAATTGATACCAAGATACTTCACTAA 12915 | |||| ||| ||||||||||| | ||| | || ||||| |||||||||| ||||||| Sbjct 6445 CATACCATTTTGCTTTGTATTCTAACATGGATCGAAATTGCAACCAAGATACCTCACTAA 6504 Query 12916 TAGATTTGGCTAACTTATGATTCTTTAGCATATTACTTACTTGCAAATCTTCAATACCGA 12975 | | ||| |||||||||| |||||||| |||||| |||||||||||| || ||||||| Sbjct 6505 TTGCTTTTGCTAACTTATAATTCTTTAACATATTCGATACTTGCAAATCCTCTATACCGA 6564 Query 12976 TTACATCGTGGTTTTTGATGATTTCGGTAGAGATTTTTTGCAAGTAATCTGTTCTTGCAT 13035 | ||||||||||||||||||||||| || || ||||| | |||||||||| |||| | || Sbjct 6565 TAACATCGTGGTTTTTGATGATTTCAGTTGAAATTTTGTCCAAGTAATCTTTTCTAGTAT 6624 Query 13036 TGGTGATTTTTTCGTGAATACGTGCAACTTTAATTCGTTGCTTATTCCAATTAGAACCGC 13095 | | || | ||| ||||| | || || || | |||||| |||||||| |||| | Sbjct 6625 TTGATATGTATTCATGAATTCTAGCTACCTTTACTCGTTGTTTATTCCAGCGAGAAGATC 6684 Query 13096 CTTTTGTGCGTCTGGAAAGAATACGTTGTGCGTTTGCTAATTTTTCTTCAAGTTTACGAA 13155 |||| | | ||| ||||||| ||| ||||| || || || || ||||| | | || | Sbjct 6685 CTTTCATTCTTCTAGAAAGAACACGCTGTGCCTTCGCCAACTTATCTTCTAATGATCGGA 6744 Query 13156 ACCACTTTGGATTTTCGTATGGTGTTCCATCTGAAAGAGTTGCGAAGGTTTTTAATCCAA 13215 | | || |||||||| || ||||||||||||| | | | ||||| ||||| ||| | Sbjct 6745 AAAATTTCGGATTTTCATAGTGTGTTCCATCTGACAAAATAGCGAAATCTTTTAGTCCTA 6804 Query 13216 CATCTATACCAATAGAAGAACCTGTTTTTTCTAATGGTTGCACCTCTGTTTCTACAAGAA 13275 ||||||| ||||| ||||| |||||| | | ||| || |||||||| || | | Sbjct 6805 CATCTATTCCAATGTAAGAATGTGTTTTCGGAAGTTTTTGTACTTCTGTTTCAACTAATA 6864 Query 13276 TGGAAACAAAATATTTACCACTCGGATTACGTCTAACAGTAGCGTTAAGAATACGACCAT 13335 || ||||||||| ||||| || || ||||||| ||||| || | |||||| || | Sbjct 6865 GTGACACAAAATATCTACCAGAAGGGTTCTGTCTAACTGTAGCATTTACAATACGCCCCT 6924 Query 13336 GTACTTCACGACTTTTTGCAAAGCGAACAAGACCAAGTTTCGGCAATTTAATTTTGTTGC 13395 |||||| ||||||| ||||| |||||||| || ||||||||||| || |||||||| | Sbjct 6925 CTACTTCGTGACTTTTGGCAAATCGAACAAGGCCTAGTTTCGGCAACTTTATTTTGTTCC 6984 Query 13396 CTACAATGGCAATGTTTCCATTCGTGTGTTTTGTTGTATAAGATTGAACCTTATTCTTTT 13455 |||||| |||||| ||| |||| || |||||||| ||||||||||| || || ||||| | Sbjct 6985 CTACAACGGCAATATTTTCATTTGTTTGTTTTGTGGTATAAGATTGTACGTTGTTCTTCT 7044 Query 13456 TGGACTTGAAGCGAGGTGCATCGTTTTGCTTCTTAAAGAAGCGAGAATAAGCATCAGCAA 13515 | || || ||||| ||| ||||||||| |||| Sbjct 7045 TAGATTTAAAGCG--------CGT----------------------ATAAGCATCCGCAA 7074 Query 13516 GGTTTTTGAGTGAAGATTGAATCGCAATGCTGTCCACCTCTTTTAACCAAACTAATTCTT 13575 |||| | || || ||||||||||| || ||||| ||||||| |||||| | |||| Sbjct 7075 GGTTGCGAACAGACGACTGAATCGCAATACTATCCACTTCTTTTAGCCAAACAAGCTCTT 7134 Query 13576 TCTTTAATTGG--GTTAATTGAGAAGAACACGAATTGTAAGTCAAACCTTTTCCTGTTGC 13633 |||| | ||| | || || | ||| || | || ||||| ||||||||||| | Sbjct 7135 TCTTCA--TGGCAGGTAGTTTGGCAGAGCATATACCATAGGTCAAGCCTTTTCCTGTCTC 7192 Query 13634 CTTATAAGTATCGTTCCATTTTGCGAGGAAATGATTGAATACAAAACGAGAACAACCGAT 13693 || || | | |||||| | |||||||||||||||||||| |||||||| || || Sbjct 7193 TTTGTATGCGTGATTCCATAAGGATAGGAAATGATTGAATACAAAGCGAGAACACCCAAT 7252 Query 13694 TGTTTTAGCAATCAGTATTTCTTGTTCTTTGCTTGGATAGATACGAAATTTATATGCTTT 13753 ||||| || || ||| ||||| ||| |||||||||||||||| ||||| ||||| Sbjct 7253 CGTTTTGTTGATTAGAATTGCTTGTGCTTGATTTGGATAGATACGAAACTTATAGGCTTT 7312 Query 13754 ATTGACCAACATGACTTTCACCTCC 13778 ||| | || || ||||||||| Sbjct 7313 ATTCATCATTATTTGATTCACCTCC 7337 Score = 102 bits (112), Expect = 8e-17 Identities = 97/121 (80%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 14003 GCTATCCCTTGTCCGAAGGCGATTCATCTCCCACCTACTCACTGGGCTACG-CCCTTCAC 14061 |||||||||||| ||||| | |||||||||||||||||||||||| || | |||||||| Sbjct 7429 GCTATCCCTTGTTCGAAGCCAATTCATCTCCCACCTACTCACTGGACTGTGACCCTTCAC 7488 Query 14062 GTTCCTTGAGGTGGGAGTATTCTCGCCTATTTTTGATaaaa---aaaaaGACAGCTCATT 14118 | ||||||||| ||||| |||| | ||| |||||||| ||||| | |||||| Sbjct 7489 GCTCCTTGAGGAAGGAGTCTTCTTGGCTA-AAATGATAAAAATGAAAAAAGCCTCTCATT 7547 Query 14119 G 14119 | Sbjct 7548 G 7548 >seq4902 Length=31017 Score = 149 bits (164), Expect = 6e-31 Identities = 243/352 (69%), Gaps = 11/352 (3%) Strand=Plus/Minus Query 12639 ATTTAGTAGGCTAACCCCGTAGCCCCTACGGTTAGAAGTCTTATCGCTTCATTTTTAATA 12698 ||| ||||||||| ||| ||| |||||||||| ||||||||| ||| | Sbjct 27420 ATTCAGTAGGCTATCCCGATAGTTCCTACGGTTA-----------GCTTCATTTCTAAGA 27372 Query 12699 TTTTGTCCTGCGTTAATGTCTCTATCGTGATGTGTTCCGCAAGATGGGCAATCCCATTCA 12758 || || ||| |||| |||||||| |||||||| || ||| | || ||||| | ||| Sbjct 27371 TTGAGTGCTGTGTTACGATCTCTATCATGATGTGTGCCACAATAAGGATAATCCTACTCA 27312 Query 12759 CGAAGATTTAGATTCTTAACGTCTTTGTTTTTGTATCCGCAACACGAACACAATTGAGAA 12818 |||| |||||||| ||| | ||| ||||||| || |||| ||||| |||||| | Sbjct 27311 CGAATGTTTAGATTTTTAGCATCTATGTTTTTATAGTTGCAATTGGAACATAATTGACTA 27252 Query 12819 CTTGCAAACGTTTTAGATACCGCAACAACTTGTTTGCCGTACCGTTTCGCTTTGTATTCA 12878 ||||| |||||||||| |||| |||||| | |||| || |||| |||| Sbjct 27251 GAAGCAAATGTTTTAGATATTACAACTCATTGTTTACTATACCACTTTACTTTATATTTC 27192 Query 12879 AGCATCGTTCTGAATTGATACCAAGATACTTCACTAATAGATTTGGCTAACTTATGATTC 12938 | ||| ||| ||||| |||||| | |||||||| | ||| | | ||| ||| Sbjct 27191 AACATTGTTTAAAATTGTGGCCAAGACATGTCACTAATCGCTTTTACAAGCTTTCTATTT 27132 Query 12939 TTTAGCATATTACTTACTTGCAAATCTTCAATACCGATTACATCGTGGTTTT 12990 || |||||| ||| | || || | ||| || | || |||| || |||| Sbjct 27131 TTGAGCATACCACTGAATTATAACTATTCTTTATCAATGACATGATGCTTTT 27080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497712114759000