Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq23920 150 2e-30 seq18099 129 7e-24 >seq23920 Length=773 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || |||||||||||||| || | | || Sbjct 436 GCTTGGCCAATTCTCCGGGCAGGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGA 495 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||||| |||||||| | |||| | |||| | Sbjct 496 TGGTGGACCTCTTGTTGTAGTGGGCGAGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGA 555 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | |||| ||||||| || |||||||| Sbjct 556 TGTCGTTCACGAACGAGTTCATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGT 615 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || || ||||| ||||| ||| Sbjct 616 GGACTTGTTTCAGCACTTTGTAAATG 641 >seq18099 Length=159039 Score = 129 bits (142), Expect = 7e-24 Identities = 194/273 (71%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| || ||||| ||||| ||||| || || | | | || | ||||| Sbjct 20352 GAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGT 20293 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || ||||| ||| ||||| ||||| |||||||| Sbjct 20292 ACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAG 20233 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || ||||| ||||| ||||| || || ||||| |||| |||||| ||| Sbjct 20232 AAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTC-ACG 20174 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || ||| ||| || || || ||||||||||||| || || ||||| || ||||| Sbjct 20173 GTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTA 20114 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||| | || ||||| | || || || Sbjct 20113 CATTTCCCAGATCTGTGGGTAGTGAATCGGAAA 20081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104777788746675