Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq18065 111 1e-19 seq5576 111 1e-19 seq18044 98.7 8e-16 seq28288 89.7 4e-13 seq24711 89.7 4e-13 seq14351 89.7 4e-13 seq7697 89.7 4e-13 seq4225 82.4 6e-11 >seq18065 Length=21122 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| ||||||||||| || | ||||| |||||||||||| | ||| ||| || | Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 | || | | | | || || | ||||| || |||||||| | || ||| || Sbjct 12467 T-ACACCATTGACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 12525 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||||||| | ||| ||||||||||| ||||||| | || | |||||||| || Sbjct 12526 GCAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTTAGCGGATTATAA 12585 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||| || | || ||||| | | ||| |||| |||| Sbjct 12586 CATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGAA 12635 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| | | || || |||||||||||| | ||| ||| Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| ||||||| || |||||||| | || ||| || Sbjct 14940 GATACCATTGACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 14999 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| |||||||| || ||||||| |||| | |||||||||||| Sbjct 15000 CAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAAC 15059 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 | ||||| || || || ||||| Sbjct 15060 ACCCAAAAGGAGTCAACTCTGCAC 15083 >seq5576 Length=16168 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| ||||| ||||| ||||||||||||||| | ||| ||| || | Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || |||||| ||||| ||||| | | ||| || Sbjct 965 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCA 907 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || ||||||||||| ||||||| | || | ||||||||||| Sbjct 906 ACAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGCGGATTACAA 847 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || ||||| | ||| | ||| || | || || || || Sbjct 846 TATCCAAAAGGAGTCTACACTTCACCTTGTGCTACGTCTTCGTGGTGG 799 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| ||||| ||||| |||| ||||||||||| || |||| || | || | Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || |||||| || |||||||| | || ||| || Sbjct 1193 -GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCA 1135 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || ||||| | ||| ||||||||||| ||||||| | | || | ||||||||||| Sbjct 1134 ACAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAA 1075 Query 110452 CATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 1074 TATCCAAAAGGAATCAAC 1057 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || || |||||| | || ||||| ||||| || | || || | || Sbjct 1481 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTC- 1423 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || || | | || || ||||| ||||||||||| | || ||| || Sbjct 1422 CGACACCGTAGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCA 1363 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| ||||| | ||| ||||||||||| ||||| | | | || |||| |||||||| Sbjct 1362 ACAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAA 1303 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| || || || | ||| |||| Sbjct 1302 CATCCAAAAGGAGTCAACTCTCCACTTGGT 1273 >seq18044 Length=6213 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| ||||||||||| ||| | || || ||||| |||||| | ||| ||| || | Sbjct 3304 ATGCAGATATTTGTCAAGACTCTTACTGGTAAAACAATTACCCTAGAAGTCGAGAGCTCA 3245 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| || ||| ||||| ||||| | || ||| || Sbjct 3244 -GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCA 3186 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||||||||| ||||||| |||| | || |||||||| Sbjct 3185 GCAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGAACCCTTGCAGATTACAA 3126 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || |||| |||| | || || |||| || Sbjct 3125 CATTCAGAAGGAATCAACCCTGCATTTGGTTCTCAGGTTGAGAGGTGG 3078 >seq28288 Length=9629 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || ||||| ||||| | || || ||||| |||||| | ||| ||| || | Sbjct 4619 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAACTCA 4678 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | | || || ||||||| ||||| ||||| | || ||| || Sbjct 4679 -GACACTATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCA 4737 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| || | || |||||||| || ||||||| | ||| | ||||| ||||| Sbjct 4738 GCAGAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGTCGGACATTAGCGGACTACAA 4797 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| ||||| || || Sbjct 4798 CATTCAGAAAGAGTCAAC 4815 >seq24711 Length=27656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | ||||| || || || || |||| ||| | Sbjct 4196 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACTCTCGAGGTGGAAAGTTCT 4255 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||||| || || ||||| | || |||||| Sbjct 4256 GATACGATCGACAACGTTAAAGCGAAGATTCAGGATAAGGAAGGTATTCCTCCGGATCAG 4315 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | || ||||| || |||| || | | || ||||||||||||| Sbjct 4316 CAGAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGACGTACCTTGGCGGATTACAAT 4375 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || ||||||||| | ||| ||||||| Sbjct 4376 ATCCAGAAGGAATCTACGCTTCACTTGGTGTT 4407 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || ||||| || ||||| | ||| || | Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| |||||||| || | || ||| || Sbjct 4712 GACACTATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 4771 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| ||||| ||||| || || | |||||| |||| ||||||||| Sbjct 4772 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 4831 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || ||||| ||||| | || ||||||| Sbjct 4832 ATCCAGAAAGAGTCTACTCTTCATTTGGTGTT 4863 >seq14351 Length=15190 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| |||| |||||| ||||| || || |||||||| || | ||| || | || Sbjct 4618 ATGCAGATATCTGTCAAGACTTTGACGGGTAAAACCATCACTCTTGAAGTCGAAAGCTCG 4677 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || ||||||| ||||| ||||| | || ||| || Sbjct 4678 -GATACGATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCGGACCA 4736 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || ||||||||||| ||||||| | ||| | || || ||||| Sbjct 4737 ACAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGGACATTAGCTGACTACAA 4796 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 |||||| ||||| || || | ||| | || | | || || || ||||| Sbjct 4797 CATTCAGAAAGAGTCAACTCTTCACCTTGTTCTCCGTCTCCGTGGTGGAAA 4847 >seq7697 Length=17472 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| |||||||| |||||||| | || |||| | Sbjct 10875 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACCATTACTCTTGAGGTGGAGAGCTCC 10816 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| ||||| ||||| ||||| | || ||||| Sbjct 10815 GACACTATTGACAATGTGAAAGCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 10756 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | || ||||| || || || |||| ||||| | |||||||||||| Sbjct 10755 CAGAGGCTTATCTTCGCTGGTAAGCAACTTGAAGATGGGAGAACTCTTGCGGATTACAAC 10696 Query 110453 ATTCAAAAAGAATCTAC 110469 || || ||||| || || Sbjct 10695 ATCCAGAAAGAGTCCAC 10679 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 ||||||||||| || ||||| | || || || ||||| || |||| || |||| || Sbjct 11331 ATGCAAATATTCGTGAAAACACTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 11272 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| ||| | || || ||||| ||||| ||||| | || |||| Sbjct 11271 GAC---ACTATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGAT 11215 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||| | || | || ||||||||||| || |||| | | || |||| || ||| Sbjct 11214 CAGCAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACTTTGGCAGACTAC 11155 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| || |||||| |||| | || || |||| || Sbjct 11154 AATATCCAGAAGGAATCAACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 11105 >seq4225 Length=52512 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330 ||||||| || || || ||||| |||| || || || || ||| | || || || Sbjct 2963 AAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTT 2904 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || ||| | | || ||| ||||||| ||||| ||||| | || ||| | Sbjct 2903 CGGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCGGACC 2844 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| | | || | ||| |||||||| | || || | |||||| | || ||||||| Sbjct 2843 AGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGAAGAACACTCGCTGATTACA 2784 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 |||| || |||||||| ||| | || |||| || || | |||| ||| Sbjct 2783 ACATCCAGAAAGAATCAACGCTTCATTTGGTTCTACGATTAAGAGGAGGA 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412696818386075