Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq24711 105 5e-18 seq5576 98.7 8e-16 seq18065 93.3 3e-14 seq18044 89.7 4e-13 seq8442 84.2 2e-11 seq16226 82.4 6e-11 seq7697 82.4 6e-11 >seq24711 Length=27656 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || || || || || || || ||||||||| |||| |||| | Sbjct 4880 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTGGAGAGTTCT 4939 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || |||||| ||||| ||||| | || ||| ||| Sbjct 4940 GACACTATTGACAACGTGAAGGCAAAGATCCAAGATAAGGAAGGTATTCCACCGGACCAG 4999 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||||| ||||| | || |||| |||||||| Sbjct 5000 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAT 5059 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || |||||||||||||| |||||| |||||||| Sbjct 5060 ATCCAAAAGGAGTCTACATTGCACTTGGTGTTG 5092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| |||||| | || || || || || || |||| ||| | Sbjct 4196 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACTCTCGAGGTGGAAAGTTCT 4255 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || ||| |||||| ||||| ||||| | || ||||||| Sbjct 4256 GATACGATCGACAACGTTAAAGCGAAGATTCAGGATAAGGAAGGTATTCCTCCGGATCAG 4315 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | || ||||| || |||| |||| || ||||||| ||||| Sbjct 4316 CAGAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGACGTACCTTGGCGGATTACAAT 4375 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| |||||| | ||| |||||||| Sbjct 4376 ATCCAGAAGGAATCTACGCTTCACTTGGTGTTG 4408 >seq5576 Length=16168 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| ||||| ||||||||||||||| | ||| ||| ||| Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || ||||| | | ||| || Sbjct 965 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCA 907 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | || ||||||||||| ||||| | || | ||||| ||||| Sbjct 906 ACAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGCGGATTACAA 847 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||||||||| | ||| | ||| Sbjct 846 TATCCAAAAGGAGTCTACACTTCACCTTGTG 816 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| ||||| ||||| |||| ||||||||||| || |||| || | ||| Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| ||||||||||| | || ||| || Sbjct 1193 -GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCA 1135 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||| | ||| ||||||||||| ||||| | | || | ||||| ||||| Sbjct 1134 ACAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAA 1075 Query 107735 CATTCAAAAGGAGTCTAC 107752 || |||||||| || || Sbjct 1074 TATCCAAAAGGAATCAAC 1057 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| || || |||||| | || ||||| ||||| || | || || | ||| Sbjct 1481 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTC- 1423 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || || | | || || ||||| || |||||||| | || ||| || Sbjct 1422 CGACACCGTAGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCA 1363 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || || ||||| | ||| ||||||||||| ||||||| | || |||| || ||||| Sbjct 1362 ACAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAA 1303 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||||||||| || | ||| |||| || | ||| |||| || Sbjct 1302 CATCCAAAAGGAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGAGG 1255 >seq18065 Length=21122 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| | | || || |||||||||||| | ||| ||| Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| ||||||||||| | || ||| ||| Sbjct 14940 GATACCATTGACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 14999 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| |||||||| || ||||| | ||| | ||||| |||||| Sbjct 15000 CAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAAC 15059 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 | ||||||||||| || ||||| Sbjct 15060 ACCCAAAAGGAGTCAACTCTGCAC 15083 >seq18044 Length=6213 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || || ||||| |||||| | ||| ||| ||| Sbjct 3304 ATGCAGATATTTGTCAAGACTCTTACTGGTAAAACAATTACCCTAGAAGTCGAGAGCTCA 3245 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| || ||| || || ||||| | || ||| || Sbjct 3244 -GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCA 3186 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||||||||| ||||| | ||| | || || ||||| Sbjct 3185 GCAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGAACCCTTGCAGATTACAA 3126 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||| || || |||| |||| | || ||| |||| || Sbjct 3125 CATTCAGAAGGAATCAACCCTGCATTTGGTTCTCAGGTTGAGAGGTGG 3078 >seq8442 Length=60656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| ||||| || ||| | |||||||| ||||| ||| | ||| || | ||| Sbjct 44259 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAGACCATAACCCTTGAAGTCGAAAGCTC- 44201 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | | || ||||| ||||||||||| | | ||| | Sbjct 44200 CGACACAATTGACAATATCAAGACCAAGATCCAAGATAAAGAAGGAATTTCTCCGGACGA 44141 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||||||||| ||||||| || | ||||| ||||| Sbjct 44140 GCAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGACGGTCGTACTCTTGCGGATTACAA 44081 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 44080 CATCCAGAAGGAGTCAAC 44063 >seq16226 Length=39664 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || || || ||||| ||||| ||| | ||| || ||| Sbjct 12048 ATGCAGATTTTTGTCAAGACCTTGACCGGCAAGACCATCACCTTGGAAGTTGAAAGCTC- 11990 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || ||||| || | || ||| || Sbjct 11989 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCA 11930 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | || || || || || || |||| | ||| ||||||||||||| Sbjct 11929 GCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGTAGAACTCTGGCGGACTACAA 11870 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||| || | ||| |||||||| Sbjct 11869 TATCCAGAAAGAGTCCACTCTCCACTTGGTGTTG 11836 >seq7697 Length=17472 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || ||||| || ||||| |||||||| | || |||| ||| Sbjct 10875 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACCATTACTCTTGAGGTGGAGAGCTC- 10817 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || ||| ||||| || || ||||| | || ||||| Sbjct 10816 CGACACTATTGACAATGTGAAAGCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCA 10757 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || ||||| || || || || | | ||| | ||||| ||||| Sbjct 10756 GCAGAGGCTTATCTTCGCTGGTAAGCAACTTGAAGATGGGAGAACTCTTGCGGATTACAA 10697 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || || ||||| || | ||| | || ||| Sbjct 10696 CATCCAGAAAGAGTCCACTCTCCACCTTGTCTTG 10663 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| ||||| || || || ||||| || | || ||| ||| Sbjct 11103 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 11044 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || |||||| || ||||| || | || |||||| Sbjct 11043 -GATACGATCGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCTCCGGATCA 10985 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| |||||||| | || ||||| || || || || | | || | || |||||||| Sbjct 10984 GCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCTAGCAGACTACAA 10925 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || || |||||||| | ||| | |||||| Sbjct 10924 CATCCAGAAAGAGTCTACACTCCACCTTGTGTTG 10891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398736915775975