Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq24711 105 5e-18
seq5576 98.7 8e-16
seq18065 93.3 3e-14
seq18044 89.7 4e-13
seq8442 84.2 2e-11
seq16226 82.4 6e-11
seq7697 82.4 6e-11
>seq24711
Length=27656
Score = 105 bits (116), Expect = 5e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || || || || || || || || ||||||||| |||| |||| |
Sbjct 4880 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTGGAGAGTTCT 4939
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| ||| | | | | || || |||||| ||||| ||||| | || ||| |||
Sbjct 4940 GACACTATTGACAACGTGAAGGCAAAGATCCAAGATAAGGAAGGTATTCCACCGGACCAG 4999
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| | || | ||| || || ||||| ||||| | || |||| ||||||||
Sbjct 5000 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAT 5059
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| |||||||||||||| |||||| ||||||||
Sbjct 5060 ATCCAAAAGGAGTCTACATTGCACTTGGTGTTG 5092
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| |||||| | || || || || || || |||| ||| |
Sbjct 4196 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACTCTCGAGGTGGAAAGTTCT 4255
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| ||| | | || ||| |||||| ||||| ||||| | || |||||||
Sbjct 4256 GATACGATCGACAACGTTAAAGCGAAGATTCAGGATAAGGAAGGTATTCCTCCGGATCAG 4315
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||| | || | || ||||| || |||| |||| || ||||||| |||||
Sbjct 4316 CAGAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGACGTACCTTGGCGGATTACAAT 4375
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || ||||| |||||| | ||| ||||||||
Sbjct 4376 ATCCAGAAGGAATCTACGCTTCACTTGGTGTTG 4408
>seq5576
Length=16168
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| ||||| ||||| ||||||||||||||| | ||| ||| |||
Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || || |||||| || || ||||| | | ||| ||
Sbjct 965 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCA 907
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||||| || | || ||||||||||| ||||| | || | ||||| |||||
Sbjct 906 ACAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGCGGATTACAA 847
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| |||||||||||||| | ||| | |||
Sbjct 846 TATCCAAAAGGAGTCTACACTTCACCTTGTG 816
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614
|||||||| ||||| ||||| |||| ||||||||||| || |||| || | |||
Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || || |||||| ||||||||||| | || ||| ||
Sbjct 1193 -GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCA 1135
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||| ||||| | ||| ||||||||||| ||||| | | || | ||||| |||||
Sbjct 1134 ACAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAA 1075
Query 107735 CATTCAAAAGGAGTCTAC 107752
|| |||||||| || ||
Sbjct 1074 TATCCAAAAGGAATCAAC 1057
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614
|||||||| || || |||||| | || ||||| ||||| || | || || | |||
Sbjct 1481 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTC- 1423
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || || | | || || ||||| || |||||||| | || ||| ||
Sbjct 1422 CGACACCGTAGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCA 1363
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|| || ||||| | ||| ||||||||||| ||||||| | || |||| || |||||
Sbjct 1362 ACAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAA 1303
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||| ||||||||||| || | ||| |||| || | ||| |||| ||
Sbjct 1302 CATCCAAAAGGAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGAGG 1255
>seq18065
Length=21122
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| | | || || |||||||||||| | ||| |||
Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || ||| |||||| ||||||||||| | || ||| |||
Sbjct 14940 GATACCATTGACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 14999
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||| | || | ||| |||||||| || ||||| | ||| | ||||| ||||||
Sbjct 15000 CAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAAC 15059
Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759
| ||||||||||| || |||||
Sbjct 15060 ACCCAAAAGGAGTCAACTCTGCAC 15083
>seq18044
Length=6213
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| ||| | || || ||||| |||||| | ||| ||| |||
Sbjct 3304 ATGCAGATATTTGTCAAGACTCTTACTGGTAAAACAATTACCCTAGAAGTCGAGAGCTCA 3245
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || ||| || ||| || || ||||| | || ||| ||
Sbjct 3244 -GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCA 3186
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | ||| ||||||||||| ||||| | ||| | || || |||||
Sbjct 3185 GCAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGAACCCTTGCAGATTACAA 3126
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|||||| ||||| || || |||| |||| | || ||| |||| ||
Sbjct 3125 CATTCAGAAGGAATCAACCCTGCATTTGGTTCTCAGGTTGAGAGGTGG 3078
>seq8442
Length=60656
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614
|||||||| ||||| || ||| | |||||||| ||||| ||| | ||| || | |||
Sbjct 44259 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAGACCATAACCCTTGAAGTCGAAAGCTC- 44201
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || | | | | | || ||||| ||||||||||| | | ||| |
Sbjct 44200 CGACACAATTGACAATATCAAGACCAAGATCCAAGATAAAGAAGGAATTTCTCCGGACGA 44141
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | ||| ||||||||||| ||||||| || | ||||| |||||
Sbjct 44140 GCAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGACGGTCGTACTCTTGCGGATTACAA 44081
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||| ||
Sbjct 44080 CATCCAGAAGGAGTCAAC 44063
>seq16226
Length=39664
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||||||||| || || || ||||| ||||| ||| | ||| || |||
Sbjct 12048 ATGCAGATTTTTGTCAAGACCTTGACCGGCAAGACCATCACCTTGGAAGTTGAAAGCTC- 11990
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || | | | | || || ||||| || ||||| || | || ||| ||
Sbjct 11989 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCA 11930
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | || | || || || || || || |||| | ||| |||||||||||||
Sbjct 11929 GCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGTAGAACTCTGGCGGACTACAA 11870
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || || ||||| || | ||| ||||||||
Sbjct 11869 TATCCAGAAAGAGTCCACTCTCCACTTGGTGTTG 11836
>seq7697
Length=17472
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || ||||| || ||||| || ||||| |||||||| | || |||| |||
Sbjct 10875 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACCATTACTCTTGAGGTGGAGAGCTC- 10817
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| ||| | | | | || ||| ||||| || || ||||| | || |||||
Sbjct 10816 CGACACTATTGACAATGTGAAAGCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCA 10757
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | || ||||| || || || || | | ||| | ||||| |||||
Sbjct 10756 GCAGAGGCTTATCTTCGCTGGTAAGCAACTTGAAGATGGGAGAACTCTTGCGGATTACAA 10697
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| || || ||||| || | ||| | || |||
Sbjct 10696 CATCCAGAAAGAGTCCACTCTCCACCTTGTCTTG 10663
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| |||||||| ||||| || || || ||||| || | || ||| |||
Sbjct 11103 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 11044
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | || || |||||| || ||||| || | || ||||||
Sbjct 11043 -GATACGATCGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCTCCGGATCA 10985
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| |||||||| | || ||||| || || || || | | || | || ||||||||
Sbjct 10984 GCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCTAGCAGACTACAA 10925
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| || || |||||||| | ||| | ||||||
Sbjct 10924 CATCCAGAAAGAGTCTACACTCCACCTTGTGTTG 10891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398736915775975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |