Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4225 111 2e-19 seq7697 96.9 5e-15 seq18044 86.0 1e-11 >seq4225 Length=52512 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || || ||||| || | || || ||| | | Sbjct 2960 TGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTTCGG 2901 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| || || ||| || ||||| |||||||| || || | Sbjct 2900 ACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCGGACCAGC 2841 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| || ||||| | | ||||| || | Sbjct 2840 AACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGAAGAACACTCGCTGATTACAACA 2781 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| || | ||||| || |||||||||||||||| Sbjct 2780 TCCAGAAAGAATCAACGCTTCATTTGGTTCTACGATTAAGAGGAGG 2735 >seq7697 Length=17472 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | |||||| | || ||||| || || ||| | || || || | Sbjct 11330 TGCAAATATTCGTGAAAACACTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCTG 11271 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | ||||| || ||| || || || ||||| ||||| || ||||| | Sbjct 11270 ACACTATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAGC 11211 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || |||||||| |||| ||| | || || |||| || |||| Sbjct 11210 AAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACTTTGGCAGACTACAATA 11151 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| || | || || || | ||||| ||||| |||| Sbjct 11150 TCCAGAAGGAATCAACCTTGCACTTGGTTCTCCGATTGAGAGGTGGTA 11103 >seq18044 Length=6213 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| ||||| | || || | || || ||||||||||| | || || || | | | Sbjct 3303 TGCAGATATTTGTCAAGACTCTTACTGGTAAAACAATTACCCTAGAAGTCGAGAGCTCA- 3245 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| |||||| ||| || ||||| || || || || || Sbjct 3244 GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAG 3185 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||| |||||||| | || ||| | |||| | ||||||| || Sbjct 3184 CAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGAACCCTTGCAGATTACAAC 3125 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || || ||||| || | ||||| || | | || ||||| |||| Sbjct 3124 ATTCAGAAGGAATCAACCCTGCATTTGGTTCTCAGGTTGAGAGGTGGTA 3076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785883625773000