Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_023599.1 Length=38772 Score E Sequences producing significant alignments: (Bits) Value seq20250 1366 0.0 >seq20250 Length=26292 Score = 1366 bits (1514), Expect = 0.0 Identities = 1454/1916 (76%), Gaps = 2/1916 (0%) Strand=Plus/Plus Query 22262 TGTTAGAAAGATATCTTGTACGAAATGATTATGTATCAGCGGCTAAATTATTATCCAATG 22321 ||||||||| ||||||| ||||||| |||| |||| || ||| | ||| ||| Sbjct 23410 TGTTAGAAAAGCATCTTGTGAAAAATGATCATGTTGCAGCAGCGAAACTTTTAAGTGATG 23469 Query 22322 GGATTCATTATGGAGTGAAAATTGGTGGAGTGGGATTCATTACCTATGTATTTTTTCGAA 22381 | || |||||||| ||| || |||||||| | |||||| |||||||| ||| || Sbjct 23470 GAATATATTATGGAATGAGGATAGGTGGAGTTTGTTTCATTGGTTATGTATTCATTCAAA 23529 Query 22382 TTATAATTATGTTCTAGG-AGGCTTGT-CATGGGAATCATAAAAGAATGGCTTCATAAGA 22439 || | ||||| |||| ||| | |||||| || |||| || ||||||||||| Sbjct 23530 TTGTGGAGATGTTTTAGGGAGGAAATTACATGGGGATTTTAAAGGATTGGCTTCATAAAC 23589 Query 22440 GGTCTTTAAAACACCAGATTATTGAGGTGTTCCAAAAGGCAGGCTTATATACGGAACATC 22499 ||| || | | |||| ||||| || ||||||||| |||||| || |||| Sbjct 23590 AAAGTTTGAAGAATCGACTTATAGAGGTATTTGTAAAGGCAGGTTTATATGTAGACCATC 23649 Query 22500 AAACACGTGGAGGGAAAATCCCAATTTATCCAAAGGTTCATGCTGTTTTTTCTTCAAACG 22559 ||||| | || || ||| | || ||||| || ||| | |||| ||||||| || || | Sbjct 23650 AAACAAGAGGTGGAAAAGTACCCATTTACCCGAAGATACATGACATTTTTTCCTCGAAAG 23709 Query 22560 AAAGCGTGAAATATGTATTTACTATCCCCAATGGATTAGATCCAAAGACAATTGAAAAGA 22619 ||| || ||| ||||||| || || || ||||||||||| || | |||||||||| Sbjct 23710 AAAAGGTTCGATACATATTTACCATTCCAAACGGATTAGATCCGAAAAACATTGAAAAGA 23769 Query 22620 AATGGTTTTGCTTTCAACAAATATTTGGACGGAATGTAGCAATTGAGGGAGATATTAAAA 22679 | ||||||||||||||||||||||| || || |||||||||||||| || |||||||||| Sbjct 23770 AGTGGTTTTGCTTTCAACAAATATTAGGGCGTAATGTAGCAATTGAAGGTGATATTAAAA 23829 Query 22680 AGTTTGTGCTCAATGTATTTCATTCTGATGGTGGTTTGAAACAATACAACTACAGCTATA 22739 |||||| || ||||| |||||||| |||| ||| | || |||||| ||||| |||| Sbjct 23830 GGTTTGTACTTAATGTGTTTCATTCGGATGCTGGGCTACAAGCATACAATTACAGTTATA 23889 Query 22740 AGCAATGGCAACCATTTATAAAAGAATGCCGTCTTCCTGTTATAGTAGGGCGTGACCAGT 22799 || | ||||||||||| | | | || | |||||| || || |||||||||||||| | Sbjct 23890 AGAAGTGGCAACCATTACTTATACAACATCATCTTCCCGTAATTGTAGGGCGTGACCAAT 23949 Query 22800 TTGGAAACATGCTTGTTTATGATATGGTAAACCCCAATACACCCCATTTACTAATTGCAG 22859 ||||||| ||| || ||||| ||| | | || || || ||| | |||||||||| Sbjct 23950 TTGGAAATATGATTACGTATGACATGATTGCTTCAAACACGCCGCATCTTCTAATTGCAG 24009 Query 22860 GAGAAACAGGTAGCGGAAAAAGTAGTATGGTACGTGTTGTACTTTCTACACTCATTCAAT 22919 |||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 24010 GAGAGACAGGGAGCGGAAAAAGTAGTATGGTACGCGTTGTACTGTCCACACTCATTCAAT 24069 Query 22920 ACATGCCTCCTGATAAATTATATTTGTACCTAGGTGACTTGAAAAACTCTGAATTTCATT 22979 | ||| |||||||||||||| |||||||||| ||||| ||||| || || |||||||||| Sbjct 24070 ATATGTCTCCTGATAAATTACATTTGTACCTGGGTGATTTGAAGAATTCCGAATTTCATT 24129 Query 22980 TCTTGCGTAGAGTAAAACATGTGAAAGAAGTGTGCATGGAAGAAATCGAAATGAAAGTCA 23039 ||||||| || || ||||| || ||||| || |||||||||||||| |||||||| | | Sbjct 24130 TCTTGCGAAGGGTGAAACACGTAAAAGAGGTTTGCATGGAAGAAATAGAAATGAAGATTA 24189 Query 23040 TGCTTCATAAGGTTTGGAATGAAATCAGGGAACGCAGAAAGCTCATGGAAGAATATGAAG 23099 |||| || || || ||||| ||||| | ||||| ||||| | |||||||| ||||||| Sbjct 24190 TGCTGCAGAAAGTGTGGAAGGAAATACGCGAACGTAGAAAATTGATGGAAGAGTATGAAG 24249 Query 23100 TGGATCACATTGATGAGTATAACAAATTAAATCCTGATAAACAGAAACTCTATATTCTGT 23159 | ||||| ||||| || || |||||||||||||||||||| ||||||| ||||| | Sbjct 24250 TAGATCATATTGACGAATACAACAAATTAAATCCTGATAATCAGAAACCATATATCTTAC 24309 Query 23160 TAGCTATCGATGAAGTAGCGATGCTACAAGATGAAAAAGAATGTATGACGACAATAGAAA 23219 | |||||||| ||||| | ||| | ||||||||||||||||||||| | | | | |||| Sbjct 24310 TTGCTATCGACGAAGTGGTCATGTTGCAAGATGAAAAAGAATGTATGTCTATAGTTGAAA 24369 Query 23220 AAATATCGGCAGTTGGTCGGTCGCTAGGTGTATTCCTTATGCTATCTATGCAAAGACCAG 23279 ||||||||||||| || || | || || || || | |||||| ||||||| | || | Sbjct 24370 AAATATCGGCAGTCGGAAGGGCACTTGGAGTTTTTTTAATGCTAAGTATGCAACGCCCTG 24429 Query 23280 ACGCAAAGGTGTTAGATGGTAAGTTAAAGCTAAATATGACGGTTAGAATGGGCTTTAAAT 23339 | ||||| || | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24430 ATGCAAAAGTACTGGATGGTAAGTTAAAGCTCAATATGACGGTTAGAATGGGCTTTAAAT 24489 Query 23340 GCGATAACACAATTAATAGTAACATCATGGGTACACCTGGATCAGAGCAATTAGAGCAAT 23399 | |||| |||||||| ||||| || |||||||| ||||| ||||| | || ||||||| Sbjct 24490 GTGATAGTACAATTAACAGTAATATTATGGGTACTCCTGGTTCAGAACGCTTGGAGCAAT 24549 Query 23400 CTGGACAAATGATTCTAAAGTTAAATGGATTAAAGAAAGTGCAAGCTCCATATTTAGAAT 23459 |||| |||||||| ||||||||||||||||||||||||| ||| |||| |||||||||| Sbjct 24550 CTGGCCAAATGATATTAAAGTTAAATGGATTAAAGAAAGTACAATCTCCTTATTTAGAAT 24609 Query 23460 TAAATAAAGCAAAGCAAATAGTTGAACCTTACCGTTTACTCAAAGAAGATATGAGGCTTC 23519 ||| |||||| ||| | |||||||||||||| || | | ||||| |||| | | | | Sbjct 24610 TAAGTAAAGCCAAGAAGATAGTTGAACCTTATCGCGTTCCGAAAGAGAATATAAAGTTGC 24669 Query 23520 AGAATTCGTCAAAACAAGAACTTCCATTGTTTGGAGTGTTGGAACATGAAGAGTAGAGAT 23579 | || || || ||||| || ||| || || ||||| || |||| || |||||| Sbjct 24670 AAAACCTACCACAAGAAGAAAATCAATTATTCGGGGTGTTAGATTATGAGGAATAGAGAC 24729 Query 23580 AAAGCGATTATAAAAGACTTATGCCGCTTTAGATGCCTATCACGAGATGATATTATCGAT 23639 ||||| || |||| | || | |||||||| | || || ||||| ||||| ||| Sbjct 24730 AAAGCCATACTAAACAATTTGAAGCTTTTTAGATGTATGTCTCGTGATGACATTATTGAT 24789 Query 23640 TTGCATTTTCAAGGACTCAAGAAAGCTGTGACCAGTTGCAATACGGTTATGAAACGATTA 23699 ||||||||||||||| | ||||| || || || | || |||||||| ||||| |||||| Sbjct 24790 TTGCATTTTCAAGGATTAAAGAACGCGGTTACATGCTGTAATACGGTGATGAAGCGATTA 24849 Query 23700 AGGCGAGATGGGAGCGTGGACGTAAATGTGTTACAGAAACCATATATCTACTTTCCACAA 23759 || ||||||| ||||| | ||| | | || | ||||| || ||||| || ||| Sbjct 24850 AGAAGAGATGGTCATGTGGATGCCAATATCTCGCAACAGCCATACATTTACTTCCCTCAA 24909 Query 23760 CCAAGTCCGATTCGAAAAACAAGTCAAAAGATTCCGCACTTCCTTGCTATTGTGAATGTA 23819 | || | |||| ||||| || ||||||||||| ||||| || | || | ||||| Sbjct 24910 TCCAGCACACTTCGCAAAACTAGCCAAAAGATTCCCCACTTTCTAGGCATATTAGATGTA 24969 Query 23820 TATAAGCAACTTCTTCAGTACGAAAAGCCTAAATTGTTTAAAGTCGAGCCGAAGTATGGT 23879 ||||| || ||| | | || ||||| |||||| |||||||||| ||||| ||||| ||| Sbjct 24970 TATAAACAGCTTATCTATTATGAAAAACCTAAACTGTTTAAAGTGGAGCCAAAGTACGGT 25029 Query 23880 AAAGCATATATGGAGCCAGACATATTTGCAATTTGGCGACAATCTCCATTTTTCATAGAA 23939 |||| || ||||| || || |||| |||||||||| ||||||||| ||||| ||| Sbjct 25030 AAAGAATTCATGGAACCTGATGCATTTACAATTTGGCGTAGATCTCCATTCTTCATTGAA 25089 Query 23940 GTTCAGAATTCGGTATACAGTAAGAAAGTAATGCAAGAGAAATTAAACCGATATGAATTT 23999 || |||| || || ||||| || ||||| |||||||| ||| |||| | |||||||| Sbjct 25090 GTCCAGAGGTCAGTTTACAGCAAAAAAGTTATGCAAGATAAAATAAATAGGTATGAATTA 25149 Query 24000 TACTTTCATAGTTTGGAATGGCAGCGAGAACTATGGCAACCCAAGAAATCGAAATACTTC 24059 ||||| || ||| ||||||||| ||| ||||| || || |||| |||||||| Sbjct 25150 TACTTCCACAGTCAGGAATGGCATAACGAATCTTGGCAGCCAAAAGAATCTAAATACTTT 25209 Query 24060 CCTTCTCTTCTGGTAATTACCGATAGCCAGTATGACATCTCCTCTTCAAATTTTCGCATA 24119 || || | || ||||||| || | | ||| | ||| ||||| | | || || Sbjct 25210 CCATCAATACTTATAATTACTGAAAAGTATTATAATATCAGCTCTTTTAGCCTACGTATT 25269 Query 24120 TTTCAAGCTAAATCCATTCACGATTTCATGAATCAAATGGTTGTTAAGGCGTAGTA 24175 ||||||||| || ||| ||||| ||||| | ||||| || || |||| Sbjct 25270 TTTCAAGCTTCTTCAATTAGTAATTTCTTGAATAGCCTTGTTGTAAAAGCACAGTA 25325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123906446307700