Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq24711 118 1e-21
seq4225 116 4e-21
seq5576 113 4e-20
seq7697 96.9 3e-15
seq16226 84.2 2e-11
seq2313 84.2 2e-11
>seq24711
Length=27656
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || |||| |||||| || ||||||| ||||| ||||| || ||||||||||| |
Sbjct 4878 CCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 4819
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || |||||| || || ||||||||| |||||| | ||||| || |||||
Sbjct 4818 AAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGA 4759
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || |||||||| ||| || || | | || | ||||| | | ||| |||
Sbjct 4758 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTTTCAACT 4699
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | |||||||| ||||| || || || || || ||||||
Sbjct 4698 TCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651
>seq4225
Length=52512
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||||| ||| || | ||| ||||||| || |||||||| || |||||||||||
Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| ||| || |||||| | ||||||||| ||| |||||| ||||||||| || || ||
Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| ||| || ||| | | || | ||||| | | ||| ||
Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 2914
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | ||||| || || | ||||| ||||| || |||||
Sbjct 2915 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961
>seq5576
Length=16168
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||||| ||||||| ||| || || | || || || ||||| ||||||||||| |
Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | ||| ||||| |||||||| ||| |||| || | ||| || || |||||
Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| || || || | | ||| || ||||| | | ||| ||
Sbjct 1375 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACC 1434
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 137414
|||| || | |||||||| || | ||||| ||||| |||||||| ||
Sbjct 1435 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCATCGC 1484
>seq7697
Length=17472
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | |||||| || | || | || || ||||| || |||||||||||
Sbjct 10649 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGCA 10708
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || ||| ||||| ||||| |||||||| |||| || | |||||||| |||||
Sbjct 10709 AGAGTTCTCCCATCTTCAAGTTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGGA 10768
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| || || ||| | | || | ||||| | | || ||
Sbjct 10769 ATACCTTCCTTGTCTTGGATCTTAGCTTTCACATTGTCAATAGTGTCGGAGCTCTCCACC 10828
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|||| ||| | |||||||||||||| || || || || || ||||||
Sbjct 10829 TCAAGAGTAATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATA 10876
>seq16226
Length=39664
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | |||||| || || |||| || || || || || |||||||| |||
Sbjct 11138 CCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 11197
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | || || || || || |||||| | || ||||| ||||| || |||||
Sbjct 11198 AAGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 11257
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| || || || | | || | ||||||| | || ||
Sbjct 11258 ATACCTTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCAACC 11317
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|||| || | ||||| || ||||| || || ||||| ||||||||| ||
Sbjct 11318 TCAAGGGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATACCT 11368
>seq2313
Length=70781
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/123 (76%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAG- 137256
||| || | ||||| ||||| ||||| || ||||||||||| ||| | | ||||
Sbjct 4707 CAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCTAAG---GTTCGACC 4763
Query 137257 -TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315
||||| ||||| ||||||||| | ||||| | || ||||| || ||||| ||||||||
Sbjct 4764 ATCTTCAAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGTGGTATACCTTCTTT 4823
Query 137316 GTC 137318
|||
Sbjct 4824 GTC 4826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488368276830000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |