Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq16440 230 2e-55 >seq16440 Length=49053 Score = 230 bits (254), Expect = 2e-55 Identities = 534/791 (68%), Gaps = 27/791 (3%) Strand=Plus/Plus Query 26006 TTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCA 26065 |||||||| ||||| ||||| | || || || || | || ||| || || || | Sbjct 28443 TTTTTAAATGCAATTTCTTCTAAACAGGCTACTTTTAAACTCTGTCTTTTTTCAATCGTT 28502 Query 26066 TGAACAAATTGAGATGCTTCCA-TAA-GACTTTCATGTGTTCCTGTATCCAGCCAAGTGA 26123 | | |||||| | |||||| | ||| || ||| ||||| |||||||||||||| | Sbjct 28503 TCTATAAATTGTGCTGCTTCTAATAATGA--TTCGTGTGTGCCTGTATCCAGCCATGCAT 28560 Query 26124 AACCTCTTCCTAGTT-TACAGACACGTAAAG-TCTTTTCTTTCCAGTACATCTCATTTAT 26181 | |||||||| | | | || || ||| || |||| | || | ||||| Sbjct 28561 AGCCTCTTCCCAATAATTCA-ACTTCTAATTCTCCCATCTTAAGA-TATTCTTTGTTTAT 28618 Query 26182 ATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAAC 26241 ||| || |||||||| || || | | ||| ||||| | | | || ||| | | ||| || Sbjct 28619 ATCTGTTATCTCTAATTCTCCACGACTAGACGGTTTTATGGTTTTTGCTATTTCTATCAC 28678 Query 26242 AGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggttt 26301 | ||||| ||||| |||| || || | ||| ||||| ||||||| ||||| || Sbjct 28679 ACGTTTATCATAAAAATACAGACCAGTTACTGCATAGTTTGATTTTGGTTCCTTTGGCTT 28738 Query 26302 ttCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGG 26361 ||| ||| | | || || |||||||||||| || || ||||| | || || Sbjct 28739 TTCCATGATATTAATTACATGCTTTTTAGAATCAAACTCTACTACTCCAAAACGCTCTGG 28798 Query 26362 ATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTT-TAG 26420 |||||| || | ||| ||||| | ||||||| | ||||| | || | | || ||| Sbjct 28799 ATCATTGACATAATAACCAAAAACTGTAGCTCCCCTTTTCTTCTTAACAGCCTTTTCTAG 28858 Query 26421 CAGAATCTAAAATGCTA--CCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAG 26478 | | ||| | || ||| |||||| | || | |||||| || || | | Sbjct 28859 TA-ATTCT-----GTTAGTCCA------TGACCATAAAAGATATTATCGCCAAGAATTAA 28906 Query 26479 TGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTT 26538 |||||| ||| | |||||||| | |||| | || ||||| |||| ||||| ||||| Sbjct 28907 AGCTACATTATCATTTCCAATAAACTCCTCAGCGATTATAAATGCTTGTGCTATACCTTC 28966 Query 26539 TGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAG 26598 ||| | ||| | | ||| || | ||| ||| | |||||||||||| || Sbjct 28967 TGGATAAGGCTGAACAGTATATGAAAGAGTAATTCCATATTTTGAACCATCACCT--AAC 29024 Query 26599 ATTT--ACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCA 26656 |||| |||| ||| | ||||| |||||||| ||| |||||||| || || || || Sbjct 29025 ATTTGCTCAAATTTATTAATATCTTGTGGTGTTGAAATAATTAGTATCTCTCTTATCCCC 29084 Query 26657 GAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGT 26716 | | |||||| || || | |||||||||||||| |||||||| || || ||||||| | Sbjct 29085 GCCAACATTAGTACTGATAAAGGATAATAAATCATGGGTTTATCATAGATAGGTAATAAT 29144 Query 26717 TGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATA 26776 || || || || |||| ||||| | || || || || |||||||| | || Sbjct 29145 TGCTTTGATACAATTTGGGTAAGGGGGTACAATCTAGTACCGCTCCCACCTGCAAGAATG 29204 Query 26777 ATACCTTTCAT 26787 ||||||||||| Sbjct 29205 ATACCTTTCAT 29215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475259393628000