Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_023693.1
Length=148612
Score E
Sequences producing significant alignments: (Bits) Value
seq16440 230 2e-55
>seq16440
Length=49053
Score = 230 bits (254), Expect = 2e-55
Identities = 534/791 (68%), Gaps = 27/791 (3%)
Strand=Plus/Plus
Query 26006 TTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCA 26065
|||||||| ||||| ||||| | || || || || | || ||| || || || |
Sbjct 28443 TTTTTAAATGCAATTTCTTCTAAACAGGCTACTTTTAAACTCTGTCTTTTTTCAATCGTT 28502
Query 26066 TGAACAAATTGAGATGCTTCCA-TAA-GACTTTCATGTGTTCCTGTATCCAGCCAAGTGA 26123
| | |||||| | |||||| | ||| || ||| ||||| |||||||||||||| |
Sbjct 28503 TCTATAAATTGTGCTGCTTCTAATAATGA--TTCGTGTGTGCCTGTATCCAGCCATGCAT 28560
Query 26124 AACCTCTTCCTAGTT-TACAGACACGTAAAG-TCTTTTCTTTCCAGTACATCTCATTTAT 26181
| |||||||| | | | || || ||| || |||| | || | |||||
Sbjct 28561 AGCCTCTTCCCAATAATTCA-ACTTCTAATTCTCCCATCTTAAGA-TATTCTTTGTTTAT 28618
Query 26182 ATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAAC 26241
||| || |||||||| || || | | ||| ||||| | | | || ||| | | ||| ||
Sbjct 28619 ATCTGTTATCTCTAATTCTCCACGACTAGACGGTTTTATGGTTTTTGCTATTTCTATCAC 28678
Query 26242 AGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggttt 26301
| ||||| ||||| |||| || || | ||| ||||| ||||||| ||||| ||
Sbjct 28679 ACGTTTATCATAAAAATACAGACCAGTTACTGCATAGTTTGATTTTGGTTCCTTTGGCTT 28738
Query 26302 ttCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGG 26361
||| ||| | | || || |||||||||||| || || ||||| | || ||
Sbjct 28739 TTCCATGATATTAATTACATGCTTTTTAGAATCAAACTCTACTACTCCAAAACGCTCTGG 28798
Query 26362 ATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTT-TAG 26420
|||||| || | ||| ||||| | ||||||| | ||||| | || | | || |||
Sbjct 28799 ATCATTGACATAATAACCAAAAACTGTAGCTCCCCTTTTCTTCTTAACAGCCTTTTCTAG 28858
Query 26421 CAGAATCTAAAATGCTA--CCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAG 26478
| | ||| | || ||| |||||| | || | |||||| || || | |
Sbjct 28859 TA-ATTCT-----GTTAGTCCA------TGACCATAAAAGATATTATCGCCAAGAATTAA 28906
Query 26479 TGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTT 26538
|||||| ||| | |||||||| | |||| | || ||||| |||| ||||| |||||
Sbjct 28907 AGCTACATTATCATTTCCAATAAACTCCTCAGCGATTATAAATGCTTGTGCTATACCTTC 28966
Query 26539 TGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAG 26598
||| | ||| | | ||| || | ||| ||| | |||||||||||| ||
Sbjct 28967 TGGATAAGGCTGAACAGTATATGAAAGAGTAATTCCATATTTTGAACCATCACCT--AAC 29024
Query 26599 ATTT--ACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCA 26656
|||| |||| ||| | ||||| |||||||| ||| |||||||| || || || ||
Sbjct 29025 ATTTGCTCAAATTTATTAATATCTTGTGGTGTTGAAATAATTAGTATCTCTCTTATCCCC 29084
Query 26657 GAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGT 26716
| | |||||| || || | |||||||||||||| |||||||| || || ||||||| |
Sbjct 29085 GCCAACATTAGTACTGATAAAGGATAATAAATCATGGGTTTATCATAGATAGGTAATAAT 29144
Query 26717 TGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATA 26776
|| || || || |||| ||||| | || || || || |||||||| | ||
Sbjct 29145 TGCTTTGATACAATTTGGGTAAGGGGGTACAATCTAGTACCGCTCCCACCTGCAAGAATG 29204
Query 26777 ATACCTTTCAT 26787
|||||||||||
Sbjct 29205 ATACCTTTCAT 29215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475259393628000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |