Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq4225 134 9e-27
seq27144 100 2e-16
seq18065 100 2e-16
seq24711 96.9 2e-15
seq18044 93.3 3e-14
seq17640 93.3 3e-14
seq16226 89.7 3e-13
seq7697 87.8 1e-12
seq14351 86.0 4e-12
>seq4225
Length=52512
Score = 134 bits (148), Expect = 9e-27
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| ||||| || |||| |||||||| || || ||||| || ||||||||||| | |
Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | | |||| || |||||||| |||||||| |||||||| ||||| || | ||
Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| ||| ||| |||| |||| ||| | ||||| ||||| ||
Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTC-ACATTGTCGATTGTGTCCGAAGATTCAAC 2913
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || || || || || |||| ||||| || |||||||||||
Sbjct 2914 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961
>seq27144
Length=112545
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || |||||||| || | ||| || ||| |||| || | |||||||||||| ||
Sbjct 90308 TCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAG 90367
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|| || || || ||||| | || | ||||| ||||| || || | | ||||
Sbjct 90368 ATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 90426
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | |||||| |||||| || || | |||||||| || ||||||| ||||| ||
Sbjct 90427 GTCGATGGTGTCCGATGATTCAACCTCGAGAGTGATCGTCTTCCCTGTTAGGGTTTTCAC 90486
Query 33738 AAAGATCTGCAT 33749
|||||||||||
Sbjct 90487 GAAGATCTGCAT 90498
>seq18065
Length=21122
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | | |||||||| ||||| ||| || || |||||||| || |
Sbjct 12406 ACCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGC 12347
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | ||||||||||||||| || | | ||| ||||| | |
Sbjct 12346 AAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATCCGGATG 12287
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| ||||| ||| || || | |||| ||| | |||||| ||| |
Sbjct 12286 GATTCCTTCCTTGTCTTGAATCTT-TGCCTTTACATTGTCTATTGTGTCGGAGCTTTCAA 12228
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||||| || || || || ||||| | || ||||||||||| |||||
Sbjct 12227 CGTCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 12179
>seq24711
Length=27656
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| ||||||||||| ||||| |||||| || ||||||||||| |
Sbjct 4879 ACCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGC 4820
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || | |||| || | || || || ||||| ||||| | |||||| || | ||
Sbjct 4819 CAAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGG 4760
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| |||||||| ||| || ||| |||| ||| | |||||| ||| |
Sbjct 4759 AATACCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTGTCAATAGTGTCGGAGCTTTCAA 4701
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || || || || || || |||||||||||||||
Sbjct 4700 CTTCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| |||||||| || || || || || || || |||||||| |
Sbjct 4423 ACCACCACGAAGACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGC 4364
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || ||| |||| |||||||| || || || || ||||| | ||||||||| | ||
Sbjct 4363 CAAGGTACGTCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGG 4304
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| || || ||| ||| ||| ||| | ||| | || || |||||
Sbjct 4303 AATACCTTCCTTATCCTGAATCTTCGCTTT-AACGTTGTCGATCGTATCAGAACTTTCCA 4245
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || || | ||||| ||||||||||||||
Sbjct 4244 CCTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||| | ||| ||||| ||| || || || |||||||| | || || || | || ||
Sbjct 4633 CACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTC 4574
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| ||| ||||| || |||||||| | ||||||||| | || | |||||| || ||
Sbjct 4573 AAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTG 4514
Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
||| || || ||||| |||| ||| || ||||| |||| || || ||||
Sbjct 4513 AATCTTGGCCTT-AACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTAATAGTTT 4455
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||| || || || || |||||||||||||||
Sbjct 4454 TACCAGTCAAGGTCTTCACAAAGATCTGCATA 4423
>seq18044
Length=6213
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | | |||||||| || || || || || ||||||||||| |
Sbjct 3077 ACCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGC 3136
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | ||||| |||||||| |||| | |||||| || | ||
Sbjct 3137 AAGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGG 3196
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||||| ||||| |||||| | || ||||| ||| | |||||| ||| |
Sbjct 3197 GATTCCTTCCTTGTCTTGAATTTT-AGCTTTAACATTGTCAATGGTGTCTGAGCT---CT 3252
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || |||||||| || | || || ||||| ||||||||
Sbjct 3253 CGACTTCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304
>seq17640
Length=82317
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | ||| | || | ||| || || || || || |||||||| || |
Sbjct 53374 CACCACCACGAAGACGAAGGACAAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAG 53315
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
||| || ||| |||| || | ||||||||| || || || ||||| ||||| || | |
Sbjct 53314 CGAGAGTACGTCCGTCTTCGAGTTGTTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTG 53255
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || || ||| | ||| ||| | ||| || ||||||
Sbjct 53254 GGATTCCTTCCTTGTCTTGGATCTTGGCTTTGA-CATTGTCGATGGTATCAGATGATTCA 53196
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || || || |||| ||||| || |||||||||||
Sbjct 53195 ACCTCGAGAGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 53146
>seq16226
Length=39664
Score = 89.7 bits (98), Expect = 3e-13
Identities = 162/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| |||||||| || ||||| ||| || || |||||||| || |
Sbjct 11593 ACCACCACGAAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 11652
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | || || |||||||| ||||| | |||||| || | ||
Sbjct 11653 AAGAGTACGACCATCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 11712
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT---T 33697
| ||| |||||||| ||| || ||||| | | ||| | |||||| ||| |
Sbjct 11713 AATACCCTCTTTGTCTTGAATCTTGGCTTTCA-CGTTGTCGATGGTGTC---TGAGCTCT 11768
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | || || || ||||| || || || || || ||||||||||||
Sbjct 11769 CAACCTCGAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATA 11821
>seq7697
Length=17472
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| || || | || |||||| |||||| || ||||||||||| |
Sbjct 10648 ACCACCACGAAGACGCAAGACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGC 10707
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | | || || | ||| || || || || || | | |||||||||| | ||
Sbjct 10708 AAGAGTTCTCCCATCTTCAAGTTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGG 10767
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || |||| |||| ||| | |||||| ||||
Sbjct 10768 AATACCTTCCTTGTCTTGGATCTTAGCTTTC-ACATTGTCAATAGTGTCGGAGCTCTCCA 10826
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| || || || || || || || || || |||||||||||||||
Sbjct 10827 CCTCAAGAGTAATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATA 10876
>seq14351
Length=15190
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||| | ||| | ||||| || || || ||| || || ||||||||||| |
Sbjct 4163 ACCACCTCTGAGACGAAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGC 4104
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | ||||| |||||||| ||||| | |||||| || | ||
Sbjct 4103 AAGAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 4044
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||| || ||| || | | ||| ||| | |||||| ||| |
Sbjct 4043 GATTCCTTCTTTATCTTGAATCTT-AGCCTTGACACTGTCAATTGTGTCGGAGCTTTCGA 3985
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| || || || || ||||| | || ||||||||||| |||||
Sbjct 3984 CCTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 3936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328588725048000
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