Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4225 134 9e-27 seq27144 100 2e-16 seq18065 100 2e-16 seq24711 96.9 2e-15 seq18044 93.3 3e-14 seq17640 93.3 3e-14 seq16226 89.7 3e-13 seq7697 87.8 1e-12 seq14351 86.0 4e-12 >seq4225 Length=52512 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || |||| |||||||| || || ||||| || ||||||||||| | | Sbjct 2735 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGCG 2794 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | |||| || |||||||| |||||||| |||||||| ||||| || | || Sbjct 2795 AGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 2854 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| ||| |||| |||| ||| | ||||| ||||| || Sbjct 2855 ATTCCTTCCTTGTCTTGAATCTTCGCTTTC-ACATTGTCGATTGTGTCCGAAGATTCAAC 2913 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || |||| ||||| || ||||||||||| Sbjct 2914 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2961 >seq27144 Length=112545 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || | ||| || ||| |||| || | |||||||||||| || Sbjct 90308 TCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAG 90367 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || || || || ||||| | || | ||||| ||||| || || | | |||| Sbjct 90368 ATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 90426 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| |||||| || || | |||||||| || ||||||| ||||| || Sbjct 90427 GTCGATGGTGTCCGATGATTCAACCTCGAGAGTGATCGTCTTCCCTGTTAGGGTTTTCAC 90486 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 90487 GAAGATCTGCAT 90498 >seq18065 Length=21122 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | | |||||||| ||||| ||| || || |||||||| || | Sbjct 12406 ACCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGC 12347 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||||||||||||| || | | ||| ||||| | | Sbjct 12346 AAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATCCGGATG 12287 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || || | |||| ||| | |||||| ||| | Sbjct 12286 GATTCCTTCCTTGTCTTGAATCTT-TGCCTTTACATTGTCTATTGTGTCGGAGCTTTCAA 12228 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || || || || ||||| | || ||||||||||| ||||| Sbjct 12227 CGTCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 12179 >seq24711 Length=27656 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||||||||| ||||| |||||| || ||||||||||| | Sbjct 4879 ACCACCACGTAGACGCAACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGC 4820 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | |||| || | || || || ||||| ||||| | |||||| || | || Sbjct 4819 CAAAGTTCTGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGG 4760 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| ||| || ||| |||| ||| | |||||| ||| | Sbjct 4759 AATACCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTGTCAATAGTGTCGGAGCTTTCAA 4701 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || ||||||||||||||| Sbjct 4700 CTTCCAAAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCATA 4651 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || || || || || || || |||||||| | Sbjct 4423 ACCACCACGAAGACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGC 4364 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| |||| |||||||| || || || || ||||| | ||||||||| | || Sbjct 4363 CAAGGTACGTCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGG 4304 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| ||| ||| ||| | ||| | || || ||||| Sbjct 4303 AATACCTTCCTTATCCTGAATCTTCGCTTT-AACGTTGTCGATCGTATCAGAACTTTCCA 4245 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| |||||||||||||| Sbjct 4244 CCTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| ||||| ||| || || || |||||||| | || || || | || || Sbjct 4633 CACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTC 4574 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||| ||||| || |||||||| | ||||||||| | || | |||||| || || Sbjct 4573 AAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTG 4514 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || || ||||| |||| ||| || ||||| |||| || || |||| Sbjct 4513 AATCTTGGCCTT-AACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTAATAGTTT 4455 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || || || ||||||||||||||| Sbjct 4454 TACCAGTCAAGGTCTTCACAAAGATCTGCATA 4423 >seq18044 Length=6213 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | | |||||||| || || || || || ||||||||||| | Sbjct 3077 ACCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGC 3136 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||| |||||||| |||| | |||||| || | || Sbjct 3137 AAGGGTTCGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGG 3196 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| |||||| | || ||||| ||| | |||||| ||| | Sbjct 3197 GATTCCTTCCTTGTCTTGAATTTT-AGCTTTAACATTGTCAATGGTGTCTGAGCT---CT 3252 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||| || | || || ||||| |||||||| Sbjct 3253 CGACTTCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq17640 Length=82317 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||| || || || || || |||||||| || | Sbjct 53374 CACCACCACGAAGACGAAGGACAAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAG 53315 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || ||| |||| || | ||||||||| || || || ||||| ||||| || | | Sbjct 53314 CGAGAGTACGTCCGTCTTCGAGTTGTTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTG 53255 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || ||| | ||| ||| | ||| || |||||| Sbjct 53254 GGATTCCTTCCTTGTCTTGGATCTTGGCTTTGA-CATTGTCGATGGTATCAGATGATTCA 53196 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || |||| ||||| || ||||||||||| Sbjct 53195 ACCTCGAGAGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 53146 >seq16226 Length=39664 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || ||||| ||| || || |||||||| || | Sbjct 11593 ACCACCACGAAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 11652 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || |||||||| ||||| | |||||| || | || Sbjct 11653 AAGAGTACGACCATCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 11712 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT---T 33697 | ||| |||||||| ||| || ||||| | | ||| | |||||| ||| | Sbjct 11713 AATACCCTCTTTGTCTTGAATCTTGGCTTTCA-CGTTGTCGATGGTGTC---TGAGCTCT 11768 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || ||||| || || || || || |||||||||||| Sbjct 11769 CAACCTCGAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATA 11821 >seq7697 Length=17472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || || | || |||||| |||||| || ||||||||||| | Sbjct 10648 ACCACCACGAAGACGCAAGACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCCGC 10707 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | ||| || || || || || | | |||||||||| | || Sbjct 10708 AAGAGTTCTCCCATCTTCAAGTTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGAGG 10767 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || |||| |||| ||| | |||||| |||| Sbjct 10768 AATACCTTCCTTGTCTTGGATCTTAGCTTTC-ACATTGTCAATAGTGTCGGAGCTCTCCA 10826 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || || || || || || ||||||||||||||| Sbjct 10827 CCTCAAGAGTAATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATA 10876 >seq14351 Length=15190 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||| || || || ||| || || ||||||||||| | Sbjct 4163 ACCACCTCTGAGACGAAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGC 4104 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||| |||||||| ||||| | |||||| || | || Sbjct 4103 AAGAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 4044 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || ||| || | | ||| ||| | |||||| ||| | Sbjct 4043 GATTCCTTCTTTATCTTGAATCTT-AGCCTTGACACTGTCAATTGTGTCGGAGCTTTCGA 3985 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || ||||| | || ||||||||||| ||||| Sbjct 3984 CCTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 3936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328588725048000