Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_025424.1 Length=45648 Score E Sequences producing significant alignments: (Bits) Value seq20250 228 2e-55 >seq20250 Length=26292 Score = 228 bits (252), Expect = 2e-55 Identities = 258/338 (76%), Gaps = 21/338 (6%) Strand=Plus/Minus Query 4592 CTCACTTTCTATTAAAAGGATTATTTTATTAAGTTATGtttttttAA-CTGAAACCAAGT 4650 |||| ||||| |||||| ||||||||| || |||||| ||| |||| | |||| | Sbjct 8622 CTCATTTTCTGTTAAAAAGATTATTTTGTTCAGTTATTTTTCATTAATCAGAAAAAATTG 8563 Query 4651 CTCCATGCCTCTTACGTCTTTCTCATAAATTGGCATTACATATATCTCTTCGTTTATTAA 4710 ||||||| |||||| || |||| ||| |||||||||||| |||||||||| ||| |||| Sbjct 8562 TTCCATGCTTCTTACATCCTTCTTATACATTGGCATTACAAATATCTCTTCATTTCTTAA 8503 Query 4711 CAGTTGGAATTCTACACATTGTTTTTCTCTGTTCCATCCGTAAGATGCCATAGGAACCAT 4770 |||||||| ||||||||| |||||||| ||||||| |||||| |||||||| || ||| Sbjct 8502 TAGTTGGAACTCTACACATCGTTTTTCTTTGTTCCACCCGTAACATGCCATA-GATACAT 8444 Query 4771 TTTAGGCTCCGCTTTTTCTGTCATTTTCTCTTcccccccTGAAT-AAAACTCAATATTCC 4829 ||| || ||| | ||||| || |||| || ||| ||||| |||||| |||||||| Sbjct 8443 TTTTGGTTCCTTTCTTTCT-TCTATTTCCCTCTACCCTTTGAATAAAAACTTAATATTCC 8385 Query 4830 GTCAATACTGTAGACAACCCATTAAGTTA-CTTTCTCCCAGTTCCCCCTTGGAGAACCAG 4888 || |||| | | |||| ||| |||| |||||||| | | ||||| | Sbjct 8384 GTTAATAATATGGACA---CAT--GGTTATCTTTCTCCGATT---CCCTT--------AT 8341 Query 4889 CCGGGCAGTTAGCTTTTGCTAGCTGCTCTTTTAGTTAT 4926 | |||||||||| |||||||||||| ||||| |||| Sbjct 8340 ATGAGCAGTTAGCTATTGCTAGCTGCTTTTTTACTTAT 8303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145902127745500