Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq11714 580 3e-161 >seq11714 Length=14353 Score = 580 bits (642), Expect = 3e-161 Identities = 711/961 (74%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 || |||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 1402 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1344 Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 || | || ||||| ||||||||||| ||||| ||||| || |||||||| || || || Sbjct 1343 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1284 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || |||||||| |||||||| || || || || ||| | |||| | Sbjct 1283 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 1224 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | || || |||||||| ||||||||| || |||||||| Sbjct 1223 TTCTGCA--GCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAA 1166 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||||| |||||||| || || | |||| | || | ||||| | |||| | | Sbjct 1165 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1106 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||| ||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 1105 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1046 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || |||| || ||||| | ||||||| |||| Sbjct 1045 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGT-TTTCTTGATCTACCCAATTGG 987 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || || || || |||| ||||||| | || ||||| ||||| ||||||| ||| | Sbjct 986 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 927 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || |||||||| |||||||| || |||||| | || || || || Sbjct 926 TGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGG 867 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 ||||||||| || || ||||| ||||| ||||| ||||| |||| || | || | ||| Sbjct 866 TGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGA 808 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| || || |||||||||| Sbjct 807 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAG 748 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || |||||||| ||||| ||||||||||| ||||| || |||||||| ||||| ||| Sbjct 747 AAACTTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTA 688 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 |||||||||| |||||| |||| |||||| | || || |||||||| ||||| |||| Sbjct 687 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 628 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 |||| |||| || || || || ||||| || || || || |||||||| || |||| Sbjct 627 GGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 568 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | || || || ||| ||||||||||||| ||| | || |||| Sbjct 567 AATCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTG 508 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| |||||||| |||||||| || ||||| | Sbjct 507 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 448 Query 20487 C 20487 | Sbjct 447 C 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148777944733950