Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24711 102 8e-17 seq18044 100 3e-16 seq5576 93.3 4e-14 seq28288 87.8 2e-12 seq18065 87.8 2e-12 seq14351 87.8 2e-12 seq16226 86.0 6e-12 >seq24711 Length=27656 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||||||||| ||||||||||| || || ||||| ||| || Sbjct 5544 ACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGTGTACGACCATCCTCA 5485 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | ||||||||||||| || || || || || ||||| ||||| Sbjct 5484 AGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGAATACCTTCCTTATCCTGG 5425 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | |||||| | ||| ||||| | || | || || Sbjct 5424 ATCTTGGCCTTCACGTTATCAATAGTATCAGAGCTCTCAACTTCAAGTGTGATTGTCTTG 5365 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | |||||||||||| Sbjct 5364 CCAGTAAGAGTCTTCACGAAAATCTGCAT 5336 >seq18044 Length=6213 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||| || || ||||||||||| || | ||| || ||| || Sbjct 3095 AACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTTCGACCATCCTC 3154 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||||||||| | |||| || | ||| || || ||||| || ||||| || || Sbjct 3155 GAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTG 3214 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | || | || || | ||| ||||| | || | ||||| Sbjct 3215 AATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACTTCTAGGGTAATTGTTTT 3274 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||| || | || |||||||| Sbjct 3275 ACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq5576 Length=16168 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||| || | ||||||| ||||| |||||||| || || |||||| Sbjct 1263 CAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACG 1322 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 || |||||||||||||||| | |||| || | ||||| || ||||| || ||||| Sbjct 1323 GCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGGATTCCTTC 1382 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || || | | ||| || || |||| || || || | || Sbjct 1383 TTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACCTCAAGTGT 1442 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || |||||||| | ||| || ||||| Sbjct 1443 TATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481 >seq28288 Length=9629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| ||||||||||||| |||| || || || ||| ||||| |||||||| Sbjct 4814 TTGACTCTTTCTGAATGTTGTAGTCCGCTAAT-GTCCGACCATCCTCGAGTTGTTTACCA 4756 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | |||| || | ||| || || ||||| || ||||| || || ||| || || Sbjct 4755 GCGAAGATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATCTTCGCCTTG 4696 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | ||| || | ||| ||||| | || | ||||||||||| || ||| Sbjct 4695 ACGTTGTCAATAGTGTCTGAGTTCTCAACTTCTAGGGTAATAGTTTTACCAGTGAGGGTT 4636 Query 132107 TTTATGAAAATCTGCAT 132123 || | || |||||||| Sbjct 4635 TTCACAAAGATCTGCAT 4619 >seq18065 Length=21122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | |||| |||||| ||||||| || || ||| | | | || ||| || Sbjct 12615 ACCAAATGAAGGGTTGATTCTTTTAGAATGTTATAATCCGCTAAAG-TCCGACCATCCTC 12557 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||||||||||| | |||| || | ||| || || ||||| || ||||||||||| Sbjct 12556 GAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGAGGGATCCCTTCTTTATC 12500 >seq14351 Length=15190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| |||||||||||||| ||| ||| | || ||| |||||||||||||| Sbjct 4813 TTGACTCTTTCTGAATGTTGTAGTCAGCTAATG-TCCGACCATCCTCGAGCTGTTTACCA 4755 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | ||||||| | |||||| || || || || ||||| || || ||| || ||| Sbjct 4754 GCGAAGATTAGTCTCTGTTGGTCCGGTGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTC 4695 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | ||||| | || ||||| | || | |||||||| |||| ||| Sbjct 4694 ACATTATCAATCGTATCCGAGCTTTCGACTTCAAGAGTGATGGTTTTACCCGTCAAAGTC 4635 Query 132107 TTTATGAAAATCTGCAT 132123 || | | |||||||| Sbjct 4634 TTGACAGATATCTGCAT 4618 >seq16226 Length=39664 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || ||||||||||||||| | |||||| | Sbjct 11150 CGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTACGACCA 11209 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | | | || |||||||| || || ||||| || |||||||| Sbjct 11210 TCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCTTCTTTG 11269 Query 132029 TC 132030 || Sbjct 11270 TC 11271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476439768909000