Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq16226 86.0 6e-12
seq8442 84.2 2e-11
seq7697 84.2 2e-11
>seq16226
Length=39664
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || || ||||| || | ||||| | ||||| ||| | |
Sbjct 12048 ATGCAGATTTTTGTCAAGACCTTGACCGGCAAGACCATCACCTTGGAAGTTGAAAGCTCC 11989
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || || || || || ||||||||||| || || || |||
Sbjct 11988 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 11929
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| ||| | || | || ||| || ||||| ||||| | ||||| | | || ||||||
Sbjct 11928 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGTAGAACTCTGGCGGACTACAAT 11869
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|| || ||||| ||||| | || || |||||
Sbjct 11868 ATCCAGAAAGAGTCCACTCTCCACTTGGTGTT 11837
>seq8442
Length=60656
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
|||||| | |||| |||||| | || || ||| | || || | ||||| || ||| |
Sbjct 44031 ATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTCA 43972
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || || || | || || || || ||||| || || || || || || |
Sbjct 43971 -GACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|| || ||||| | || || ||||||||||| || | | ||| | | ||||||||
Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCTTGGAGATTACAA 43853
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403
|||||| || ||||| || | ||||| ||| || | |||||||| ||||
Sbjct 43852 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGGAA 43803
>seq7697
Length=17472
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| || || || |||||||| | ||||| | || || || |
Sbjct 11103 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 11044
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || || ||| || || |||||||| || || || ||||||
Sbjct 11043 GATACGATCGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCTCCGGATCAG 10984
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353
|||||||| || | || || || ||||| ||||||| || | | | ||| || |||||
Sbjct 10983 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCT-AGCAGACTACAA 10925
Query 25354 TATTCAAAAAGAATCCAC 25371
|| || ||||| || ||
Sbjct 10924 CATCCAGAAAGAGTCTAC 10907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444934305108000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |