Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq16226 86.0 6e-12 seq8442 84.2 2e-11 seq7697 84.2 2e-11 >seq16226 Length=39664 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| || | ||||| | ||||| ||| | | Sbjct 12048 ATGCAGATTTTTGTCAAGACCTTGACCGGCAAGACCATCACCTTGGAAGTTGAAAGCTCC 11989 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || ||||||||||| || || || ||| Sbjct 11988 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 11929 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || ||| || ||||| ||||| | ||||| | | || |||||| Sbjct 11928 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGTAGAACTCTGGCGGACTACAAT 11869 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || ||||| ||||| | || || ||||| Sbjct 11868 ATCCAGAAAGAGTCCACTCTCCACTTGGTGTT 11837 >seq8442 Length=60656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | |||| |||||| | || || ||| | || || | ||||| || ||| | Sbjct 44031 ATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTCA 43972 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || ||||| || || || || || || | Sbjct 43971 -GACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || || ||||| | || || ||||||||||| || | | ||| | | |||||||| Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCTTGGAGATTACAA 43853 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||| || ||||| || | ||||| ||| || | |||||||| |||| Sbjct 43852 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGGAA 43803 >seq7697 Length=17472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || |||||||| | ||||| | || || || | Sbjct 11103 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 11044 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||| || || |||||||| || || || |||||| Sbjct 11043 GATACGATCGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCTCCGGATCAG 10984 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 |||||||| || | || || || ||||| ||||||| || | | | ||| || ||||| Sbjct 10983 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCT-AGCAGACTACAA 10925 Query 25354 TATTCAAAAAGAATCCAC 25371 || || ||||| || || Sbjct 10924 CATCCAGAAAGAGTCTAC 10907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444934305108000