Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18099 150 3e-30 seq23920 149 9e-30 >seq18099 Length=159039 Score = 150 bits (166), Expect = 3e-30 Identities = 351/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || || | ||||| | ||| |||||||||||| | |||| |||| || ||||| Sbjct 20079 TGTTTCCGATTCACTACCCACAGATCTGGGAAATGTACAAGAAAG-CCGAAGCATCCTTC 20137 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC-ACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||||||||| || ||||| ||| ||| || || |||||| || | ||| Sbjct 20138 TGGACCGCCGAAGAAGTCGATCTCTCACAAGACAACCGT-GACTGGGAAAATCTCAACGA 20196 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || || || || |||||||| ||||| |||| |||| |||||||| || || |||| Sbjct 20197 CGGAGAACGTCACTTCATCAAACACGTACTCG-CTTTCTTCGCCGCATCTGACGGAATCG 20255 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||| ||||| || || || ||| ||| || ||| | | || || ||| | Sbjct 20256 TACTCGAAAACCTCGCTTCACGATTCATGTCAGATGTACAAGTCTCCGAAGCGCGTGCAT 20315 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| ||||| ||||| || || || ||||| || || | || || || || ||| Sbjct 20316 TCTACGGATTCCAAATCGCTATTGAGAATATCCATTCAGAGATGTATTCTCTTCTTCTCG 20375 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 |||| ||| |||| || || | || || | || || || ||||| ||| | | Sbjct 20376 ACACATACATCAAAGATAACAAAGAAAGAGATCATTTATTCCGTGCAATCGAAACGATTC 20435 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | || | || || || | ||||| |||| |||||| | || ||| | Sbjct 20436 CTTGTGTTACCAAGAAAGCTCAATGGGCTATGACTTGGATC-----GATGGATCTCAAAC 20490 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 || || || || |||| | || || | || || || || || ||||| || || Sbjct 20491 ATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCTT 20550 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||| | || || ||||| ||||| || || |||||||| ||| Sbjct 20551 CTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGT 20593 >seq23920 Length=773 Score = 149 bits (164), Expect = 9e-30 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| || || || |||||| |||| | ||| |||| |||| || Sbjct 640 ATTTACAAAGTGCTGAAACAAGTCCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 587 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| | |||| | |||||||| | Sbjct 586 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCCGCCGAGGCCAGC 527 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | | || |||||||||||||| || Sbjct 526 CGTCTCGCCCACTACAACAAGAGGTCCACCATCACCTCTCGGGAGATCCAGACCGCTGTC 467 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| ||| ||| |||||| |||||| || || || ||||||| Sbjct 466 CGTCTCCTCCTGCCCGGAGAATTGGCCAAGCACGCTGTGTCTGAAGGCACCA 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175035798361550