Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 150 3e-30
seq23920 149 9e-30
>seq18099
Length=159039
Score = 150 bits (166), Expect = 3e-30
Identities = 351/523 (67%), Gaps = 10/523 (2%)
Strand=Plus/Plus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
|||| || || | ||||| | ||| |||||||||||| | |||| |||| || |||||
Sbjct 20079 TGTTTCCGATTCACTACCCACAGATCTGGGAAATGTACAAGAAAG-CCGAAGCATCCTTC 20137
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC-ACGGTCCACTGGGTGTCGCTGAGCGA 1455871
||||||||||| || ||||| ||| ||| || || |||||| || | |||
Sbjct 20138 TGGACCGCCGAAGAAGTCGATCTCTCACAAGACAACCGT-GACTGGGAAAATCTCAACGA 20196
Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931
|| || || || |||||||| ||||| |||| |||| |||||||| || || ||||
Sbjct 20197 CGGAGAACGTCACTTCATCAAACACGTACTCG-CTTTCTTCGCCGCATCTGACGGAATCG 20255
Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991
| ||| ||||| || || || ||| ||| || ||| | | || || ||| |
Sbjct 20256 TACTCGAAAACCTCGCTTCACGATTCATGTCAGATGTACAAGTCTCCGAAGCGCGTGCAT 20315
Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051
| ||||| ||||| ||||| || || || ||||| || || | || || || || |||
Sbjct 20316 TCTACGGATTCCAAATCGCTATTGAGAATATCCATTCAGAGATGTATTCTCTTCTTCTCG 20375
Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111
|||| ||| |||| || || | || || | || || || ||||| ||| | |
Sbjct 20376 ACACATACATCAAAGATAACAAAGAAAGAGATCATTTATTCCGTGCAATCGAAACGATTC 20435
Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171
| | || | || || || | ||||| |||| |||||| | || ||| |
Sbjct 20436 CTTGTGTTACCAAGAAAGCTCAATGGGCTATGACTTGGATC-----GATGGATCTCAAAC 20490
Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230
|| || || || |||| | || || | || || || || || ||||| || ||
Sbjct 20491 ATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCTT 20550
Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273
||| | || || ||||| ||||| || || |||||||| |||
Sbjct 20551 CTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGT 20593
>seq23920
Length=773
Score = 149 bits (164), Expect = 9e-30
Identities = 173/232 (75%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| ||||| ||||| || || || |||||| |||| | ||| |||| |||| ||
Sbjct 640 ATTTACAAAGTGCTGAAACAAGTCCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 587
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||||||||| || |||||||| |||| | |||| | |||||||| |
Sbjct 586 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCCGCCGAGGCCAGC 527
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || | || ||||||| | ||| ||| | | || |||||||||||||| ||
Sbjct 526 CGTCTCGCCCACTACAACAAGAGGTCCACCATCACCTCTCGGGAGATCCAGACCGCTGTC 467
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || || ||| ||| ||| |||||| |||||| || || || |||||||
Sbjct 466 CGTCTCCTCCTGCCCGGAGAATTGGCCAAGCACGCTGTGTCTGAAGGCACCA 415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175035798361550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |