Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq6667 625 3e-174 seq11714 569 2e-157 >seq6667 Length=26159 Score = 625 bits (692), Expect = 3e-174 Identities = 750/1016 (74%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || |||||||| ||||| ||||||||||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||| ||| | || | || |||||| | || || || || ||| Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558 | || ||||| || || || | ||||||||||| | |||||| |||||| | Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 9885 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 ||||| | ||||| || || || ||||| ||| | || || | ||| | |||||| Sbjct 9884 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 9825 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGT 159738 ||||||||||| || ||||| | |||||||||||| |||| ||||||||| ||||||| Sbjct 9824 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 9765 Query 159739 CTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTC 159798 ||| | || ||||| ||||| || || ||||||||||| |||||||||||||| Sbjct 9764 TCCGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 9705 Query 159799 AGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGG 159858 || ||||| || |||||||| ||||| ||| ||||||||||| |||||||| || Sbjct 9704 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 9645 Query 159859 GTAGCAGCAATCTTTAGATTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTC 159915 ||||| || || ||| ||||| || || |||| |||||||| | || ||||| | Sbjct 9644 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTG 9588 Query 159916 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATC 159975 ||||| || |||||||||||||| || ||| |||| || | || ||| | || || || Sbjct 9587 AACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATT 9528 Query 159976 CATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAG 160035 ||||||||||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 9527 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 9468 Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095 || ||| | || ||||||| ||||| |||||||| |||||||| || ||||| || ||| Sbjct 9467 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGG 9408 Query 160096 TCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160155 || || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 9407 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 9348 Query 160156 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTT 160215 || || || | ||| |||||| || |||| | | || || ||||| ||||| Sbjct 9347 GTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTA 9288 Query 160216 CGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACC 160275 ||||| || || ||||| ||||| || | ||||| |||||||| ||||||||||| Sbjct 9287 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 9228 Query 160276 TTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGAT 160335 ||||| || || || || || || || ||||| |||||||||||||||| || ||| Sbjct 9227 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 9168 Query 160336 CAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 9167 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112 >seq11714 Length=14353 Score = 569 bits (630), Expect = 2e-157 Identities = 730/1004 (73%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| ||||| || | || ||| | || |||| ||||| ||||| | Sbjct 1430 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 1371 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 157794 |||||| ||||| || | | |||||| | ||| || |||| ||| | |||||||| Sbjct 1370 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1311 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || ||||| || || || ||||| ||| |||| || || | || || ||||| Sbjct 1310 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1251 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 || || || ||||| || |||||| ||| || || ||| | || || ||||| || Sbjct 1250 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAAT 1191 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 ||||||||| ||||| |||| || ||||| || ||||| ||||||| |||| | || Sbjct 1190 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1131 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | ||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 1130 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1071 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 | | |||||||| || ||||| ||| |||||||| ||||| || || || || | ||| Sbjct 1070 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1011 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 || ||| | |||| || | |||||||| ||| || |||| ||||||||| || || Sbjct 1010 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 951 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 |||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 950 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 891 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 || || ||| | || || || || |||||||| || || || || |||||||||||| Sbjct 890 ATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 831 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158333 | || ||||| | | | || | ||||| || |||| || || || | | Sbjct 830 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 772 Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393 |||| | ||||| ||||||||||| || || ||||| || || || ||||| || || | Sbjct 771 GTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTG 712 Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 | || |||||||| ||||| ||| |||||||| || ||||| || || |||||| | | Sbjct 711 GCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 652 Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 158513 | || ||||| || || || || ||||| || || | || | |||||||| |||| Sbjct 651 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCA 592 Query 158514 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158573 |||| || |||||||| |||||||| || | ||||| |||| || || || | || | Sbjct 591 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATA 532 Query 158574 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158633 | ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 531 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 472 Query 158634 CACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCT 158677 | ||||||||||| || || || ||||||| |||| || || || Sbjct 471 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572817890430000