Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq11714 569 2e-157 seq6667 497 1e-135 seq27581 100 3e-16 >seq11714 Length=14353 Score = 569 bits (630), Expect = 2e-157 Identities = 699/952 (73%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 160061 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1328 Query 160062 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 160121 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 1327 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1268 Query 160122 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 160181 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 1267 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1208 Query 160182 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 160241 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 1207 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1148 Query 160242 CCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 160301 |||| |||| | || | ||||| | | || | | |||||||| |||||| Sbjct 1147 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1088 Query 160302 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 160361 ||||||||| | |||| | |||||||| || ||||| ||| |||||||| ||||| Sbjct 1087 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1028 Query 160362 GTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGAT 160421 || || || ||| ||||||| ||| | | || || | |||||||| ||| || ||| Sbjct 1027 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 968 Query 160422 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 160481 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 967 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 908 Query 160482 AATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTG 160541 || || |||||||| || || |||||| | ||||| || || |||||||| || || | Sbjct 907 AACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTA 848 Query 160542 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 160600 || ||||||||| || | || ||||| | | | || | ||||| || |||| Sbjct 847 TTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAA 789 Query 160601 AGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGC 160660 || || || | ||||| | ||||| ||||| ||||| || || ||||| || || Sbjct 788 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGC 729 Query 160661 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC 160720 || |||||||| || || || |||||||| |||||||| |||||||| || ||||| Sbjct 728 TGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTC 669 Query 160721 ACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGT 160780 | || |||||| | || || ||||| ||||| || || ||||| |||||| | ||| | Sbjct 668 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 609 Query 160781 TAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCA 160840 |||||||||||| |||||||| || |||||||| |||||||| || | | ||| |||| Sbjct 608 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 549 Query 160841 AGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGT 160900 ||| || || | || || ||||| || | | || |||||| |||||||||||||| Sbjct 548 AGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 489 Query 160901 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGAG 160952 ||||||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 488 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 497 bits (550), Expect = 1e-135 Identities = 723/1019 (71%), Gaps = 2/1019 (0%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| || || |||||||| || |||||||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| ||||| | || |||||| | || || ||||| || Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867 | ||| |||||||| ||||| | |||||||||||| | || ||| || ||| | Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 161868 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 161926 || || | ||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTGTGGGG 9886 Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986 |||||| || ||||| ||||| || ||| ||| | || || || ||| |||||| Sbjct 9885 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 9826 Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046 || ||||| || || ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 9825 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 9766 Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106 || | || || || ||||| || || ||||||||||| |||||||||||||| Sbjct 9765 ATCCGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 9706 Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166 |||||||| || || ||| | ||||| || ||||||| || || || ||||| Sbjct 9705 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 9646 Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226 || || || || ||| ||||| | | ||| | ||||| || ||||| ||||| |||| Sbjct 9645 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 9586 Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286 ||| || |||||||||||||| || ||| |||| || | || || |||| |||||||| Sbjct 9585 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCA 9526 Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346 || | || || |||||||| |||| || ||||| || ||||| || || || Sbjct 9525 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 9466 Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406 ||| | | || || | ||||| |||||||| |||||||| || ||||| || ||||| Sbjct 9465 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTC 9406 Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466 || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 9405 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 9346 Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526 || || | ||| |||||| || |||| | | || || ||| | ||||| || Sbjct 9345 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 9286 Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586 ||| || || ||||| ||||| ||| | ||||| |||||||| || ||||| || || Sbjct 9285 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 9226 Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCA 162646 ||| ||||| || ||||| | || ||||| | ||||| ||| | || || || || Sbjct 9225 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 9166 Query 162647 ACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 9165 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 9107 >seq27581 Length=27377 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 161135 GATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCT 161194 || ||||| ||||| |||||| | ||| | || ||||| ||||||||| | || ||| Sbjct 7455 GACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCATGTTCT 7396 Query 161195 TCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGAT 161254 ||||||||||||| ||| || || | || || || || |||||| ||| | ||| Sbjct 7395 AGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTCGATCAATCAGACCAGAGTTTCCTCGAT 7336 Query 161255 GATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 ||||| ||||||| ||||| || | || |||| ||| |||||||| Sbjct 7335 GATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 7286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559302753405000