Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq11714 553 2e-152 seq6667 522 3e-143 seq27581 95.1 1e-14 >seq11714 Length=14353 Score = 553 bits (612), Expect = 2e-152 Identities = 693/951 (73%), Gaps = 0/951 (0%) Strand=Plus/Minus Query 181023 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 181082 || ||||| || || ||||||| || || | ||| | |||||| | ||| || || Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1328 Query 181083 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 181142 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 1327 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1268 Query 181143 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 181202 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 1267 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1208 Query 181203 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 181262 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 1207 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1148 Query 181263 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAA 181322 |||| |||| | || | ||||| | | || | | || ||||| ||||| Sbjct 1147 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1088 Query 181323 TGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCA 181382 |||||||| || ||| | |||||||| || ||||| ||||||||| || ||||| Sbjct 1087 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1028 Query 181383 GTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 181442 || ||||| ||| ||||||| ||| | |||| || | |||||||| ||| ||||| Sbjct 1027 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 968 Query 181443 GCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCAC 181502 | ||||| || || ||||||||||| ||||||| ||| |||| ||||| || |||||| Sbjct 967 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 908 Query 181503 AACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTG 181562 |||||||| ||||| || || |||||||| || || || |||||||| || || || || Sbjct 907 AACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTA 848 Query 181563 TTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACT 181622 || ||||| ||||| ||||| ||||| || ||| | || | || || || |||| | Sbjct 847 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 788 Query 181623 GAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCC 181682 || || || | ||||||| ||||||||||||||||| || || ||||| || || Sbjct 787 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCT 728 Query 181683 GCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCA 181742 || || ||||| ||||| || |||||||| ||||||||| |||||||| || ||||| Sbjct 727 GCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCT 668 Query 181743 CTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTA 181802 | || |||||| | || || ||||| ||||| || || ||||| || || | || | Sbjct 667 TTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATT 608 Query 181803 AGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAA 181862 ||||||||||| || ||||| ||||| ||||| |||||||| || | | || | ||| Sbjct 607 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 548 Query 181863 GGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTC 181922 ||||| || | || || ||||| || | | |||||||| || || |||||||| Sbjct 547 GGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 488 Query 181923 ATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 181973 ||||| || || || || ||||||||||| || || || || || | |||| Sbjct 487 ATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 522 bits (578), Expect = 3e-143 Identities = 721/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| |||||||| ||||| ||||||||||| || | || Sbjct 10114 TGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 10055 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| |||| | || |||||| | || || ||| | ||||| || | Sbjct 10054 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 9995 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | ||| ||||||| | |||||| || ||| | || || || | Sbjct 9994 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCG 9935 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | ||||| |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 9934 TTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 9875 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 | || |||| || ||||| ||| | || || || ||| ||| || |||||||||| Sbjct 9874 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 9815 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAA 182730 | || ||||| | || ||||| ||| | | ||||||||||||||||| || | Sbjct 9814 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 9755 Query 182731 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCC 182790 | | ||||| ||||| || || || |||||||| |||||||| || || ||| |||| Sbjct 9754 TGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCC 9695 Query 182791 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 182850 | || ||||| | || || || |||||| || ||||| |||||||| ||||| | Sbjct 9694 TAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 9635 Query 182851 TCTTCAGGTTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCC 182907 | || | ||| || || |||| |||||||| | || |||||| | ||||| || | Sbjct 9634 TATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTC 9578 Query 182908 ATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCA 182967 ||||||||||||| || ||| ||||||| | || ||||| | ||||| ||||||| | Sbjct 9577 ATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTA 9518 Query 182968 CAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATT 183027 | ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 9517 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 9458 Query 183028 CCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCT 183087 | ||||| | || || || ||||| ||||| || || || ||||||||||||||||||| Sbjct 9457 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCT 9398 Query 183088 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCA 183147 | |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 9397 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAA 9338 Query 183148 TGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATG 183207 ||| | ||| | | || |||| | | || || ||| | || || ||||| |||| Sbjct 9337 CTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATG 9278 Query 183208 ATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAA 183267 | || || || || || | ||||| |||||||| || || ||||| ||||| || | Sbjct 9277 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTA 9218 Query 183268 AGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATG 183327 | || || ||| | || ||||| | ||||||||| |||| || ||||| || |||| Sbjct 9217 AAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 9158 Query 183328 AAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||||| | || |||||||| || |||||||| | || ||||| || Sbjct 9157 AAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112 >seq27581 Length=27377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 179483 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 179542 |||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||| | | Sbjct 7460 TCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCAT 7401 Query 179543 GTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTT 179602 |||| ||||| |||||| | || ||||||||| |||||| || || || Sbjct 7400 GTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTCGATCAATCAGACCAGAGTTTCC 7341 Query 179603 TGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTAC 179657 | ||||| || || || | |||||| |||| ||||| | |||||||||| Sbjct 7340 TCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 7286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614396529732000