Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 556 2e-153
seq6667 479 4e-130
seq21588 96.9 5e-15
>seq11714
Length=14353
Score = 556 bits (616), Expect = 2e-153
Identities = 705/967 (73%), Gaps = 2/967 (0%)
Strand=Plus/Minus
Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554
|||||||||||| | || ||||| |||||| | ||||| ||||| || || ||||||||
Sbjct 1402 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1343
Query 174555 GTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAA 174614
||| |||||||| ||| | | |||||| ||||| || || || || || ||||||
Sbjct 1342 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1283
Query 174615 CCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 174674
|| || |||| || || | || |||||||| || || || ||||| || |||||| |
Sbjct 1282 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 1223
Query 174675 TCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGG 174734
|| || || ||| | || || ||||||||||||||||| || | | || ||||||
Sbjct 1222 TCTGCAGCTATTGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGG 1163
Query 174735 CTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCC 174794
|| |||||||| ||||||| ||||| |||| | ||||| | ||||| |
Sbjct 1162 CTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1103
Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854
|||||||| |||||||||||||| || ||| | |||||| | |||||||| |||
Sbjct 1102 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 1043
Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914
||||| || || || |||||||| || | || || ||| | |||| || | ||||||
Sbjct 1042 GCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 983
Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974
|| || || || | ||||| | || |||||||| || ||||||| ||| | ||
Sbjct 982 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 923
Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034
||||| || || || ||||| | |||||||| || |||||||| || || || |||||
Sbjct 922 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTA 863
Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093
||||| || || | || || ||||||||||| |||| || || | ||| || |
Sbjct 862 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAG 804
Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153
|| || || |||| ||| || || | ||||||| ||||| ||||||||||| ||
Sbjct 803 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAAC 744
Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213
|||||||| || || || ||||| || || || || |||||||| ||||| ||| ||
Sbjct 743 TTATAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTT 684
Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273
|||||| || || || | || ||||||||||| || ||||| || || ||||| |||||
Sbjct 683 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 624
Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333
|| || | ||| || ||| ||||| |||||||| ||||||||||| |||||||| ||
Sbjct 623 TACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 564
Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393
|| | || | ||||| | || | || || ||||| ||| || ||||| | |||
Sbjct 563 AGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 504
Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453
||||| |||||||| |||||||| | ||||| ||||||||||| ||||| | || ||
Sbjct 503 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 444
Query 175454 AGCTGAG 175460
| ||||
Sbjct 443 TGTTGAG 437
>seq6667
Length=26159
Score = 479 bits (530), Expect = 4e-130
Identities = 711/1008 (71%), Gaps = 0/1008 (0%)
Strand=Plus/Minus
Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912
||||||| |||| |||||| | | || || | ||| | ||| | || |||||||| |
Sbjct 10122 TGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCT 10063
Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972
| | || |||| ||| ||| |||| | || || ||| | || || ||||| |||||
Sbjct 10062 ATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 10003
Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032
|| ||||| || ||||| | ||| ||||||| | || ||| || ||| | ||
Sbjct 10002 AACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAAC 9943
Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092
|| || || |||||||||||| || | | | |||||| | | |||| ||||||||
Sbjct 9942 CGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCC 9883
Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152
|||| | || || || || || ||| ||| | || || || ||| | ||||||||
Sbjct 9882 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGC 9823
Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212
||||||||| || ||||| | || || || ||| | ||||| |||||||| || ||
Sbjct 9822 TCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATC 9763
Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272
| || | || || || || || || |||||| |||||| || ||||| |||||
Sbjct 9762 CGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTC 9703
Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332
||| || || | || ||||||||||||||| ||||||||||| || ||||||||
Sbjct 9702 TGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 9643
Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392
|| || || ||| ||||| | | ||| | || || || || || |||||| |||||||
Sbjct 9642 AGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 9583
Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452
|| |||||||||||||| || ||| |||| || | || || |||| || || |||||
Sbjct 9582 ATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGG 9523
Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512
| |||||| |||||||| ||| ||||||||| || || || ||| ||| ||
Sbjct 9522 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTT 9463
Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572
| | || || | ||||| || ||||| ||||| || || ||||| || ||||| ||
Sbjct 9462 TAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACA 9403
Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632
|||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| ||
Sbjct 9402 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 9343
Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692
|| | ||| | ||| | | |||| | | || || ||| | || || |||||
Sbjct 9342 GGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGC 9283
Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752
||||| || || ||| || || | ||||| |||||||| || ||||| ||||||||
Sbjct 9282 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTA 9223
Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812
|| || || || ||| | |||||||| | | || |||||||| || ||||| ||
Sbjct 9222 TACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 9163
Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860
||||| || ||||||| || || |||||||| | || |||||
Sbjct 9162 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 9115
>seq21588
Length=30967
Score = 96.9 bits (106), Expect = 5e-15
Identities = 177/258 (69%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 161469 GTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTA 161528
||| ||| ||| | ||||||||||||||||| || | ||||||| |||||| || | |
Sbjct 13307 GTAATGGGATTTTGTTCAACCATGAGTCACCTCGTAGAGGTGAGAATTTCGTGACGAGGA 13248
Query 161529 AGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTA 161588
|||| || || | | | || | || | ||| || | ||| || |
Sbjct 13247 AGATCACGAGAGCTTTGGGAAGGATCAAGGTGGGTTTGCAGAGGAAGCTTTTCCTTGGGA 13188
Query 161589 ATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGA 161648
||||| | | | ||||||||||| |||| ||||||||||||||| ||||||||||
Sbjct 13187 ATCTACAAGCTTCAAGAGATTGGGGTTTCGCTGGAGACTATGTGGAGGCAATGTGGTTGA 13128
Query 161649 TGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGT---ATTCAG 161705
|||| || || || | |||||||| || || |||| || | | |||| || |||
Sbjct 13127 TGTTGCAGCAAGAGAAGCCTGATGATTACGTTGTTGCAACGG---AGGAGTCACATACAG 13071
Query 161706 TGAAGGACTTTGTAGAGG 161723
|| | || ||| | ||||
Sbjct 13070 TGGAAGAGTTTCTTGAGG 13053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729667053447000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |