Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 556 2e-153
seq6667 482 3e-131
seq27581 104 3e-17
>seq11714
Length=14353
Score = 556 bits (616), Expect = 2e-153
Identities = 694/951 (73%), Gaps = 0/951 (0%)
Strand=Plus/Minus
Query 177891 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 177950
|| ||||| || || ||||||| || || | ||| | |||||| | ||| || ||
Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1328
Query 177951 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 178010
|| ||| | |||||||| || || || || || || || |||||||| || |||| ||
Sbjct 1327 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1268
Query 178011 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 178070
|| | || || ||||| || || || ||||| || |||| |||| || ||||||
Sbjct 1267 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1208
Query 178071 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 178130
| || || || || ||||||||||| ||||| ||||||| ||||| || ||||| |||
Sbjct 1207 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1148
Query 178131 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 178190
|||| |||| | || | ||||| | ||||| | | || ||||| ||||||
Sbjct 1147 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1088
Query 178191 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCA 178250
||||||||| | |||| | |||||||| || ||||| ||| ||||| || |||||
Sbjct 1087 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1028
Query 178251 GTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGAC 178310
|| ||||| ||| | || || ||| || |||| || | |||||||| ||||||||
Sbjct 1027 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 968
Query 178311 GCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACAC 178370
| ||||| || || ||||||||||| ||||||| ||| |||| ||||| || || |||
Sbjct 967 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 908
Query 178371 AACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTG 178430
|||||||| |||||||| || |||||||| || || || ||||||||||| || || ||
Sbjct 907 AACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTA 848
Query 178431 TTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACA 178490
|| ||||| ||||| ||||| ||||| || ||| | | | ||||| || ||||
Sbjct 847 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 788
Query 178491 GAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCA 178550
||||| || | ||||| | ||||||||||||||||| || || ||||| || ||
Sbjct 787 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCT 728
Query 178551 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCA 178610
|| ||||| || || || || |||||||| ||||||||| |||||||| || |||||
Sbjct 727 GCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCT 668
Query 178611 CTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTA 178670
| || |||||| | || || ||||| ||||| || || ||||| || || | || |
Sbjct 667 TTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATT 608
Query 178671 AGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAA 178730
||||||||||| || ||||| ||||| ||||| |||||||| || | | || | |||
Sbjct 607 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 548
Query 178731 GGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTC 178790
||||| || | || || ||||| || | | |||||||| || || ||||||||
Sbjct 547 GGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 488
Query 178791 ATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 178841
||||| || || || || ||||||||||| || || || || || | ||||
Sbjct 487 ATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437
>seq6667
Length=26159
Score = 482 bits (534), Expect = 3e-131
Identities = 707/1000 (71%), Gaps = 0/1000 (0%)
Strand=Plus/Minus
Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292
|||| |||||| | |||| |||||||| ||||| ||||||||||| || | ||
Sbjct 10114 TGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 10055
Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352
|||| ||| ||| |||| | || |||||| | || || ||| | ||||| || |
Sbjct 10054 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 9995
Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412
|||| || || || | |||||||||||| | || ||| || ||| | || || || |
Sbjct 9994 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCG 9935
Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472
| ||||| |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 9934 TTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 9875
Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532
| || |||| || ||||| ||| | || || || ||| ||| || ||||||||||
Sbjct 9874 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 9815
Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTA 179592
| || ||||| | || ||||| ||| | | ||||||||||||||||| ||
Sbjct 9814 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 9755
Query 179593 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCC 179652
| | ||||| ||||| || || || |||||||| |||||||| || || ||| ||||
Sbjct 9754 TGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCC 9695
Query 179653 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 179712
| || ||||| | || || || |||||| || ||||| |||||||| ||||| |
Sbjct 9694 TAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 9635
Query 179713 TCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATA 179772
| || | ||| | || || | || || || || || ||||| | ||||| || ||||
Sbjct 9634 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 9575
Query 179773 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTG 179832
|||||||||| || ||| |||| || | || ||||| | ||||| ||||| | |||||
Sbjct 9574 TGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTG 9515
Query 179833 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGA 179892
|||| ||||| || | ||||||||| || |||||||| || || ||| | | |
Sbjct 9514 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 9455
Query 179893 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 179952
| || | ||||| |||||||| |||||||| || ||||| || ||||| || ||||| |
Sbjct 9454 CTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTG 9395
Query 179953 GTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 180012
| |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | |
Sbjct 9394 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTG 9335
Query 180013 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 180072
|| |||||| || |||| | | || || ||| | ||||| ||||| || || |
Sbjct 9334 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACT 9275
Query 180073 TCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGA 180132
|||| ||||| ||| | ||||| |||||||| || |||||||| ||||| || || |
Sbjct 9274 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAA 9215
Query 180133 ACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGT 180192
| |||||| | || ||||| | ||||| ||| |||| | ||||| || |||||
Sbjct 9214 ATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 9155
Query 180193 CATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232
| ||||||| || || ||||| ||| | || || ||
Sbjct 9154 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 9115
>seq27581
Length=27377
Score = 104 bits (114), Expect = 3e-17
Identities = 128/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409
|||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||| | |
Sbjct 7460 TCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCAT 7401
Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469
|||| ||||| || ||| | || ||| ||||| ||||| || ||| |||||
Sbjct 7400 GTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTCGATCAATCAGACCAGAGTTTCC 7341
Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524
| |||||||| || |||| || ||| |||| ||||| | ||||||||||
Sbjct 7340 TCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 7286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605791625922000
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