Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq11714 551 6e-152 seq6667 468 6e-127 seq27581 86.0 7e-12 >seq11714 Length=14353 Score = 551 bits (610), Expect = 6e-152 Identities = 695/952 (73%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 158421 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 158480 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1328 Query 158481 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 158540 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 1327 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1268 Query 158541 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 158600 || | || || ||||| || || || ||||| || | || |||| || |||||| Sbjct 1267 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1208 Query 158601 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 158660 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 1207 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1148 Query 158661 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 158720 |||| |||| | || | ||||| | | || | | |||||||| ||||| Sbjct 1147 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1088 Query 158721 TGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCA 158780 ||||||||| | ||| | |||||||| || ||||| ||| |||||||| || || Sbjct 1087 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1028 Query 158781 GTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGAT 158840 || || || ||| ||||||| ||| | |||| || | |||||||| ||| || ||| Sbjct 1027 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 968 Query 158841 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 158900 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 967 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 908 Query 158901 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158960 ||||| ||||||||||| || || ||| | || || || || |||||||| || || || Sbjct 907 AACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTA 848 Query 158961 TTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 159019 || |||||||||||| | || ||||| | | | || | ||||| || |||| Sbjct 847 TTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAA 789 Query 159020 AGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGC 159079 || || || | ||||||| |||||||||||||||||||| ||||| || || || Sbjct 788 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGC 729 Query 159080 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC 159139 || |||||||| || || || |||||||| ||||| ||| |||||||| || ||||| Sbjct 728 TGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTC 669 Query 159140 CTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGT 159199 || || |||||| | || || ||||| || || || || ||||| || || | || | Sbjct 668 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 609 Query 159200 GTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCA 159259 |||||||| |||||||| || |||||||| |||||||| || | ||||| |||| Sbjct 608 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 549 Query 159260 GGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGT 159319 || || || | || || ||||| ||| | | |||||||| || ||||||||||| Sbjct 548 AGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 489 Query 159320 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 159371 ||||||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 488 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 468 bits (518), Expect = 6e-127 Identities = 719/1020 (70%), Gaps = 4/1020 (0%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || || |||||||| || |||||||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| ||||| | || |||||| | || || ||||| || Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| |||||||| |||||| | |||||||||||| | || ||| || ||| | Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || || | ||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTGTGGGG 9886 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 |||||| || ||||| ||||| | ||| ||| | || || || ||| |||||| Sbjct 9885 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 9826 Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257 || ||||| || || ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 9825 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 9766 Query 160258 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 || || | | || ||||| ||||| || || ||||||||||| |||||||| |||| Sbjct 9765 ATCCGTTCAAT-TGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 9707 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | || ||||| || || ||| | ||||| || ||||||| || || || |||| Sbjct 9706 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 9647 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 | || || || || ||| ||||| | | || | ||||| ||||| || ||||| | | Sbjct 9646 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 9587 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 |||| || |||||||||||||| || ||| |||| || | || ||||| | || || | Sbjct 9586 ACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTC 9527 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| || || | | ||||||||| || |||||||| || | Sbjct 9526 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 9467 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | ||| | | || || | ||||| |||||||| |||||||| || ||||| || |||| Sbjct 9466 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGT 9407 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 9406 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 9347 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||| | |||| | | || || ||| | || || | Sbjct 9346 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTAC 9287 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 |||| || || ||||| || || || | ||||| |||||||| ||||||||||| | Sbjct 9286 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 9227 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 |||| || || || || || | || ||||| | ||||| ||| | || || || | Sbjct 9226 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 9167 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 | || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 9166 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 9107 >seq27581 Length=27377 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 ||||| ||||| |||||||| | ||| || || || || ||||||||| | ||| Sbjct 7455 GACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCATGTTCT 7396 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||| ||||| || || || | || || ||| ||||| |||| | || Sbjct 7395 AGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTCGATCAATCAGACCAGAGTTTCCTCGAT 7336 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | |||||||||||| |||||||||||| | || ||||| || || || Sbjct 7335 GATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACCTCTGATGTT 7276 Query 159735 ACTAT 159739 || || Sbjct 7275 ACCAT 7271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552274882152000