Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 603 1e-167
seq6667 509 2e-139
seq27581 95.1 1e-14
seq7508 86.0 8e-12
>seq11714
Length=14353
Score = 603 bits (668), Expect = 1e-167
Identities = 737/1003 (73%), Gaps = 2/1003 (0%)
Strand=Plus/Minus
Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920
||||| | ||| |||| ||| | |||||| | || |||| ||||| ||||| ||
Sbjct 1429 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1370
Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCT 178980
||||| ||||| || | | |||||| | ||| || | || ||| | || || |||
Sbjct 1369 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1310
Query 178981 CCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAAC 179040
|| || |||||||| || || |||||||| || |||| || || | || ||||||||
Sbjct 1309 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1250
Query 179041 ATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATC 179100
|| || || ||||| || | || | ||| || |||||| | || || ||||| |||
Sbjct 1249 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATC 1190
Query 179101 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTC 179160
|||||||| ||||| | ||||| ||||| || ||||| ||||||| |||| | ||
Sbjct 1189 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1130
Query 179161 TTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 179220
| ||||| | | || | | |||||||| ||||||||||||||| || ||||
Sbjct 1129 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1070
Query 179221 CTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCA 179280
|| ||||||||||| ||||| ||||||||| || || || || || ||||| | |||
Sbjct 1069 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1010
Query 179281 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATC 179340
|| ||| | |||| || | |||||||| ||| ||||||| ||||||||| || |||
Sbjct 1009 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 950
Query 179341 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 179400
||||||||||| |||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct 949 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 890
Query 179401 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 179460
|| || ||| | || || || || |||||||| || || || || ||||||||| ||
Sbjct 889 TTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 830
Query 179461 AGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519
| || ||||| | | ||| || | ||||| || || | || || || | ||
Sbjct 829 TCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 771
Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579
||| | ||||||||||||||||| || |||||||| || || || ||||| || || ||
Sbjct 770 TTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGG 711
Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639
|| |||||||| |||||||| || ||||| || || ||||| || |||||| | ||
Sbjct 710 CCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 651
Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699
|| |||||||| || || || ||||| |||||| | || | |||||||| |||||
Sbjct 650 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 591
Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759
||| || |||||||| |||||||| || | |||| |||||||||| || |||| ||
Sbjct 590 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 531
Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819
||||| || | | |||||||| | |||||||||||||||||||| ||||| ||
Sbjct 530 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 471
Query 179820 ACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCT 179862
||||||||||| || ||||| ||||||| |||| || || ||
Sbjct 470 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCT 428
>seq6667
Length=26159
Score = 509 bits (564), Expect = 2e-139
Identities = 701/980 (72%), Gaps = 0/980 (0%)
Strand=Plus/Minus
Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110
||||||||||| ||||| || |||||||| ||| | || |||| ||| ||| ||||
Sbjct 10094 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 10035
Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170
| || |||||| | || || ||| | ||||| || ||||| || || || | |||
Sbjct 10034 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 9975
Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230
||||||| | |||||| || ||| | || || || || ||||| |||||| | |
Sbjct 9974 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGT 9915
Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGG 180290
| | |||||| | | |||| ||||||||||| | || || |||| || |||
Sbjct 9914 TTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 9855
Query 180291 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGA 180350
|| ||| | || || || ||| ||| || ||||||||||| || ||||| |||| ||
Sbjct 9854 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 9795
Query 180351 TTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATT 180410
|||||| |||| || |||||||| || || || | || ||||| ||||| ||
Sbjct 9794 TTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGGCCTTATAATGCAATC 9735
Query 180411 GCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAG 180470
|||||||||||||| || ||||| ||||| || || || || || ||||| |||||
Sbjct 9734 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAA 9675
Query 180471 TCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTT 180530
|| ||||||||||||| || |||||| ||||| || || ||| ||||| | ||||||
Sbjct 9674 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 9615
Query 180531 CTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATA 180590
| || || || || || ||||| | ||||| || |||||||||||||| || ||| ||
Sbjct 9614 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 9555
Query 180591 CTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAA 180650
|| || | || |||||| || || ||||| | ||||| || || || | | ||||
Sbjct 9554 CTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 9495
Query 180651 GATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTAC 180710
||||| || ||||| || || || ||| | |||| |||| || ||||||||
Sbjct 9494 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 9435
Query 180711 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAG 180770
|| |||||||| || ||||| || ||||| || ||||| || |||| ||||| || ||
Sbjct 9434 TCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 9375
Query 180771 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT 180830
|| ||| | ||||| || ||||| ||||| || || | ||| |||||| || ||
Sbjct 9374 CGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTT 9315
Query 180831 GGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGA 180890
|| | | || || ||| | ||||| ||||| || || ||||| || || ||| |
Sbjct 9314 GGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 9255
Query 180891 GCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGA 180950
||||| |||||||| || || ||||| ||||| || || || || || || || |||||
Sbjct 9254 GCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 9195
Query 180951 CTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAA 181010
| ||||| ||| |||| || ||||| || || |||||| | || |||||||| ||
Sbjct 9194 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 9135
Query 181011 GTTCTACCAAGAGGTAACGC 181030
||||||||| | || |||||
Sbjct 9134 GTTCTACCACGTGGAAACGC 9115
>seq27581
Length=27377
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449
||| |||||||||| |||||||||||||| | ||| | |||||| ||||| ||||||
Sbjct 7464 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 7405
Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509
| ||||| |||||| |||||| || || ||| ||| |||||| || ||
Sbjct 7404 TCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTCGATCAATCAGACCAGAGT 7345
Query 177510 TTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGTCATATCCCACC 177569
||| | ||||| || || || | ||||||| |||| || |||| | ||||| |||
Sbjct 7344 TTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 7285
>seq7508
Length=48272
Score = 86.0 bits (94), Expect = 8e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434
|||||||| || ||| |||||||||| ||||||||||| || | || | ||||
Sbjct 20856 TGTGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTAC 20797
Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494
|||||||| |||||| |||| || ||| || |||||| | | ||| || ||
Sbjct 20796 TCATGCCGTGCTGGTTCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGAC 20737
Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGT 177554
|| ||| ||| |||||||| ||||| |||||||| ||| | | | || || |||
Sbjct 20736 CAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGGAAGAAGGCTATGTCCTAACATGT 20677
Query 177555 GT 177556
||
Sbjct 20676 GT 20675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610110072072000
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