Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 217 2e-51
seq28467 141 1e-28
seq4911 91.5 2e-13
>seq18099
Length=159039
Score = 217 bits (240), Expect = 2e-51
Identities = 581/885 (66%), Gaps = 6/885 (1%)
Strand=Plus/Minus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||| || || |||||||| | ||||| ||||||||||| || |||| || |||
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
||||| |||||||||||||| | || ||| ||| | | || | | |
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
||| ||||| |||||||| || || || |||||| ||||| |||||| || | |
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
| || || || || || ||||||| | || || || || || || | ||
Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAAT 20705
Query 39565 CGATGTTACTACCTCATCACTCGGT---GGATGCAATAAATGTTTAAACATTAAGCAGGC 39621
||| | ||| || ||||| | | | | || | | || |||| | || || ||
Sbjct 20704 CGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648
Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681
||| ||||| || || || || ||||| ||||| |||||||| || || | |||||
Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588
Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCC 39741
||| || ||||| || || ||||| || || | | || || ||||| ||||| || ||
Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528
Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTT 39801
||| || || || || || | | || || | || | || ||||| |
Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGT 20468
Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861
| ||||| | ||||||||| | |||||||| || ||||| || ||| || | ||
Sbjct 20467 CATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAATG 20408
Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921
|| | |||| | ||||||| | ||||| || | | ||| |||||| ||||||||
Sbjct 20407 ATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAATG 20348
Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981
||| || ||||| || || || |||||||| || | ||||| | | |||||| ||
Sbjct 20347 GATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATC 20288
Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041
||| |||| | || | ||||| || ||||| ||| ||||| || || ||
Sbjct 20287 TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAGC 20228
Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101
| ||| ||||| || || | ||| || | | || | ||||||| | | ||
Sbjct 20227 GAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTCACGGTTGTC 20168
Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161
|| ||| | ||| |||||||| || ||||| || || || || || || |||||||| |
Sbjct 20167 TTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATTTC 20108
Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206
||| || | | || || || ||||| ||| ||||| | |||
Sbjct 20107 CCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGG 20063
>seq28467
Length=106825
Score = 141 bits (156), Expect = 1e-28
Identities = 165/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | ||||| | |||| | || | ||||||||||| ||||||
Sbjct 81283 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 81342
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||||| ||||| || ||| |||||||||||| ||||||| |||||| ||| ||
Sbjct 81343 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGA 81402
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || || |||| || ||||| |||||| || ||||||||
Sbjct 81403 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 81462
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || |||||||| |||| | |||||| ||||||
Sbjct 81463 TCCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505
>seq4911
Length=9800
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||| | |||||||||||||||||||||||| | | ||| | || ||
Sbjct 8933 AGTTCCTGCATTACGGAGAGTAGGAGATGCGTGAGTGAACCATCTCTGAGACATCAAATG 8874
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||| |||| || || || || ||||| || || || || | || || | |||||
Sbjct 8873 GTAAGTTTTGATTGCAGAATCGATATCGTCCTTGTGGATGCCAACAGCAACCCTCATCAG 8814
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || ||||| | ||| || ||| | | ||||| ||||| || | || ||
Sbjct 8813 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTGAACTTTCAGGAGGTACAATCTCTCAAG 8754
Query 70170 AGTTTTAAACCCAAAATA 70187
|||||||| ||||| ||
Sbjct 8753 CGTTTTAAATCCAAAGTA 8736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686661727491000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |