Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6542 154 2e-32 seq4131 150 2e-31 seq13097 107 2e-18 >seq6542 Length=27459 Score = 154 bits (170), Expect = 2e-32 Identities = 284/415 (68%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| || | ||| || || | | ||||| Sbjct 11231 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAATACCGGTGTTACCTTCAAAT 11172 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || |||| ||||||| || |||||||| |||||||| || | Sbjct 11171 CCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCTCC---A 11115 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||| ||||||| |||||||| || Sbjct 11114 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGCAG 11055 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || |||||||| || ||| |||||| ||||| ||| Sbjct 11054 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGACA 10995 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | | ||| || ||| || ||| | |||||| || Sbjct 10994 AACATCTCAACAAACTCAGAACCGGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 10935 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || ||| || | ||||| ||||||||||| || ||| || || | ||| Sbjct 10934 ATAGCTTTTGCCAAAAGGGTTTTTCCCGTACCAGGAGGACCAATAAGGAGAACACCTTTC 10875 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 |||||| ||||||| | || |||||||||| | ||| ||||| ||||||| Sbjct 10874 GGGATCCGGGCACCAACTGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA 10820 >seq4131 Length=60598 Score = 150 bits (166), Expect = 2e-31 Identities = 304/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | ||| ||||| || || | | || || || Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | |||||| Sbjct 21135 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 21194 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | ||||||||||| |||||||| || |||| |||| | | |||| | || Sbjct 21195 AGAGTTTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 21251 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || ||||| || || |||||| ||| ||| || Sbjct 21252 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 21311 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || |||||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 21312 AGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG 21371 Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 | || | ||| || ||| | |||||| ||||||||| || | | ||| || || Sbjct 21372 -ATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 21430 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATA 11865 |||||| || ||| | || || | ||| ||||||||||||||| || | Sbjct 21431 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 21490 Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| || | ||| | ||| ||||| Sbjct 21491 CCTCTCAGGCTTCTTTAAAAACTCCAC 21517 >seq13097 Length=20508 Score = 107 bits (118), Expect = 2e-18 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || |||||||||||||||||| | Sbjct 15587 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 15644 Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || |||||| | | ||| | || || |||||||||||||||||||| |||||| Sbjct 15645 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 15704 Query 11657 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || ||| ||||| || | ||||| | ||| | |||||| ||||| |||| Sbjct 15705 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 15762 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 |||| || | ||| || || | | |||| || || ||| || || || || | Sbjct 15763 CAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACTCCTGCCTCTC 15822 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | || ||||| ||||| || || Sbjct 15823 CGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 15862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627806104740000