Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4131 140 4e-28 seq18099 132 6e-26 seq6542 132 6e-26 seq13097 87.8 2e-12 >seq4131 Length=60598 Score = 140 bits (154), Expect = 4e-28 Identities = 305/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 21075 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21134 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 21135 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 21194 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | ||||||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 21195 AGAGTTTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 21251 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||||| || || ||||| || |||||| || || || Sbjct 21252 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 21311 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| ||||| | ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 21312 AGATCACGTACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 21370 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| | |||||| ||| | |||||| || |||||| || | | || ||||| Sbjct 21371 GATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 21430 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939 |||||| || ||| | ||||| ||||| || |||||||| ||| || | | Sbjct 21431 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 21490 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||||| | ||| | ||| ||||| | ||| Sbjct 21491 CCTCTCAGGCTTCTTTAAAAACTCCACCACTTC 21523 >seq18099 Length=159039 Score = 132 bits (146), Expect = 6e-26 Identities = 278/412 (67%), Gaps = 7/412 (2%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 || ||| |||| |||| ||| || |||||||| | |||||||||| ||| | ||| Sbjct 20420 GCAATCGAAACGATTCCTTGTGTTACCAAGAAAGCTCAATGGGCTATGACTTGGATCGAT 20479 Query 94783 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 94842 | || | | || ||||| || || | || || || |||||||| ||||| ||| Sbjct 20480 GGA---TCTCAAACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTC 20536 Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902 ||||||||||||||||| | |||| ||||| ||||| || || |||||||| ||| | Sbjct 20537 TTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTA 20596 Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 94960 ||||| |||||| | ||||| | ||||| || || ||| || || || | | | Sbjct 20597 ACTTTCTCTAACGAGTTAATCTCAAGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTG 20656 Query 94961 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGG 95020 | ||| | | || |||| || | | || | | | || ||||| | Sbjct 20657 A--TTTATACTCTGTTACGTACGAAGCTTAGTGAGGAAAGAGTGAAGTCGATTGTGTGTG 20714 Query 95021 AAGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTA 95080 | || ||||||||||||| || || ||| || || ||||| || || | | || | Sbjct 20715 ATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGACGCGCTTCCTTGTGCGTTGGTTGGGA 20774 Query 95081 TGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTT 95132 ||||| |||| ||| | | |||||||||| ||| | ||||| ||||| Sbjct 20775 TGAATCGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGTT 20826 >seq6542 Length=27459 Score = 132 bits (146), Expect = 6e-26 Identities = 286/421 (68%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | |||| |||||| || | | ||||| Sbjct 11231 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAATACCGGTGTTACCTTCAAAT 11172 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || || |||| ||| ||||| | ||||||||| || | Sbjct 11171 CCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---CCA 11115 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || |||||||| ||||||| ||||| ||||| Sbjct 11114 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGCAG 11055 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||||| || ||| ||| ||||| || || | ||| || ||||| || Sbjct 11054 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTTGAGGCACCAACACCGAC 10996 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| | Sbjct 10995 AAACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 10937 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| ||| || | ||| || || |||||||| || ||| ||||| ||||| Sbjct 10936 CAATAGCTTTTGCCAAAAGGGTTTTTCCCGTACCAGGAGGACCAATAAGGAGAACACCTT 10877 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 || ||| ||| ||| | || | ||||||| || | ||| ||||| ||||||| || Sbjct 10876 TCGGGATCCGGGCACCAACTGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAACTT 10817 Query 9972 C 9972 | Sbjct 10816 C 10816 >seq13097 Length=20508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||||||||||||||| ||||| || || ||||| || ||||| | |||||||| | Sbjct 15587 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 15644 Query 9673 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | || |||||| | | ||| | || || |||||||||||||||||||| || || Sbjct 15645 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 15704 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || ||| ||||| || || ||||| | ||||| || || || | || || || Sbjct 15705 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 15760 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 |||||| || | ||| || || | | || | ||| || ||| || || | || Sbjct 15761 ACCAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACTCCTGCCTC 15820 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | |||| || | ||| ||||| ||||| || || Sbjct 15821 TCCGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 15862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583051008381000