Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq18099 123 3e-23 >seq18099 Length=159039 Score = 123 bits (136), Expect = 3e-23 Identities = 370/564 (66%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||| | | |||| |||| |||||||| | || |||||| Sbjct 20081 TTTCCGATTCACTACCCACAGATCTGGGAAATGTACAAGAAAGCCGAAGCATCCTTCTGG 20140 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||| || | || ||| | |||| || ||||| || ||||| ||| Sbjct 20141 ACCGCCGAAGAAGTCGATCTCTCACAAGACAACCGTGACTGGGAAAATCTCAACGACGGA 20200 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 || | || |||||||| || || || |||||||| || ||| ||||| || | Sbjct 20201 GAACGTCACTTCATCAAACACGTACTCGCTTTCTTCGCCGCATCTGACGGAATCGTACTC 20260 Query 59742 GAAAATATAGA--CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 ||||| | | || || | || ||||| || | |||| || || | |||| Sbjct 20261 GAAAACCTCGCTTCACGATTCATGTCA--GATGTACAAGTCTCCGAAGCGCGTGCATTCT 20318 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| | | ||| |||||| || |||| ||| || || | |||| Sbjct 20319 ACGGATTCCAAATCGCT-ATTGAGAATATCCATTCAGAGATGTATTCTCTTCTTCTCGAC 20377 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCC 59918 | | |||| ||| |||| | | | | | |||||||| || || ||| || Sbjct 20378 ACATACATCAAAGATAACAAAGAAAGAGATCATTTATTCCGTGCAATCGAAACGATTCCT 20437 Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGC---ATCATT 59974 |||| | ||||| ||||||| ||| ||||| || |||| | | |||| Sbjct 20438 TGTGTTACCAAGAAAGCTCAATGGGCTATGACTTGGATCGA----TGGATCTCAAACATT 20493 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || ||||| || |||| || || || || ||||| || ||||||||||| || ||||| Sbjct 20494 CGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCTTCTG 20553 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 | | ||||||||||| || || ||||| |||||||| || | | |||||| |||||| | Sbjct 20554 TTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTAACTTTCTCTAACGAGTT 20613 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || | ||||| || || || Sbjct 20614 AATCTCAAGAGACGAAGGTCTTCA 20637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548327502486000