Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq18099 127 2e-24 seq26539 91.5 2e-13 seq26786 89.7 6e-13 seq25179 89.7 6e-13 seq23547 89.7 6e-13 seq12459 87.8 2e-12 seq17638 86.0 7e-12 seq16478 86.0 7e-12 seq14361 86.0 7e-12 seq12701 86.0 7e-12 seq1648 86.0 7e-12 >seq18099 Length=159039 Score = 127 bits (140), Expect = 2e-24 Identities = 307/459 (67%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| ||||| || || || || || || | | |||||||| |||||||| ||| Sbjct 20631 CCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGCATGAGTCCACGTTTC 20572 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | ||||||||||||| |||||| || ||||| ||||| || || Sbjct 20571 TTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTTCAACACAAGCGAAC 20512 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || || | |||| ||||| | | | | ||||||||| |||||||| |||| Sbjct 20511 GCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGTCATAGCCCATTGAGCT 20452 Query 74949 TTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGA 75008 || | || ||| | || ||||| || |||| | | | |||| | | Sbjct 20451 TTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAAATGATCTCTTTCTTTGTTA 20392 Query 75009 TCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAAC 75068 || |||| | |||| | | ||| || ||| |||| ||||| || ||| | | | Sbjct 20391 TCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTGAATGGATATTCTCAAT-AGC 20333 Query 75069 GA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGA-AAAATTCA 75126 || ||| | ||||||| | ||||| || | | |||||||| ||| | | || Sbjct 20332 GATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATC---TGACATGAATCG 20276 Query 75127 TG--TCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTT 75184 || ||| || || | ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 20275 TGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAGCGAGTACGTGTTT 20216 Query 75185 GATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATC 75223 ||| ||||| || || |||| |||| || ||||| || Sbjct 20215 GATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTC 20177 >seq26539 Length=8929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4893 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4952 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 4953 TGAGCTACGAGAGCTAA 4969 >seq26786 Length=77583 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 22590 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22531 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 22530 TGAGCTACGAGAGC 22517 >seq25179 Length=49509 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 46689 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 46748 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 46749 TGAGCTACGAGAGC 46762 >seq23547 Length=54556 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 13857 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 13916 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 13917 TGAGCTACGAGAGC 13930 >seq12459 Length=39644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 38222 AGATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 38281 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 38282 CAACTGAGCTATGAAAGC 38299 >seq17638 Length=94143 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 44949 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 45008 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 45009 TGAGCTATGAAAGC 45022 >seq16478 Length=165470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 36508 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36449 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 36448 TGAGCTATGAAAGC 36435 >seq14361 Length=75377 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 64007 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 64066 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 64067 TGAGCTACGAGAGC 64080 >seq12701 Length=79169 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 76018 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 75959 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 75958 TGAGCTATGAAAGC 75945 >seq1648 Length=46984 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 13874 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 13933 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 13934 TGAGCTATGAAAGC 13947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547019173245000