Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq11714 576 2e-159 >seq11714 Length=14353 Score = 576 bits (638), Expect = 2e-159 Identities = 700/954 (73%), Gaps = 0/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||||||||| | ||||| || | | || || | | || Sbjct 1395 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTT 1336 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1335 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 1276 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || ||||| || | | || | || | Sbjct 1275 CTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAG 1216 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || || | || || ||||||||||||||||| ||| | ||||| |||||||| |||| Sbjct 1215 CTATTGGTTTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 1156 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 1155 ACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 1096 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 1095 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 1036 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || || | || |||||| | |||| ||| | ||||||||| || Sbjct 1035 CAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 976 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 975 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 916 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 915 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCG 856 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || || || || ||||| || | || |||||| | | || || || | Sbjct 855 GCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 796 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | ||||||| |||||||||||||||||| || || |||| Sbjct 795 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACA 736 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 |||||||||| || ||||| ||||| || | ||||| || |||||| |||||| || | Sbjct 735 TTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATT 676 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 675 CTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 616 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || |||| ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 615 TAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 556 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 555 ATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 496 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 495 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603277330608000