Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_029024.1
Length=56505
Score E
Sequences producing significant alignments: (Bits) Value
seq20250 143 1e-29
seq16440 116 1e-21
>seq20250
Length=26292
Score = 143 bits (158), Expect = 1e-29
Identities = 139/175 (79%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 49015 AAAAAGGGAGATCGCATCGCCCAAGGTGTCATAGCGCCAGTCGAAACAGCTAATTTTGTT 49074
||||||| | | |||||||| ||||| ||||||||| |||| | ||||||| ||||||||
Sbjct 4490 AAAAAGGTACA-CGCATCGCTCAAGGCGTCATAGCGTCAGTAGTAACAGCTCATTTTGTT 4548
Query 49075 GAGGTAGACGAGCTATCACGTAGTGATCGTGGGACAGGTGGATTTGGAAGTACGGGCGTA 49134
||||| |||||||||| |||||| || || || ||||||| | ||||||
Sbjct 4549 GAGGTGGACGAGCTATTGGTTAGTGAACGAGGTGTTGGCGGATTTGAATCTACGGGAACG 4608
Query 49135 AAGTAAGACAAAATTTGAATTTTATTAAAAAAGGAGAATGAGAGATGAATATGTA 49189
|||||||||||||||||||||||||| |||||| || | | ||| |||| ||||
Sbjct 4609 AAGTAAGACAAAATTTGAATTTTATT-AAAAAGAAGGA--ACAGAGGAATTTGTA 4660
Score = 87.8 bits (96), Expect = 6e-13
Identities = 80/97 (82%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 52108 AAAGAGCAGCTAGCAAAAGCTAACTGCTC-----AGGTAAT-GGAGAAAGATTACCATGT 52161
||| |||||||||||| |||||||||||| ||| ||| |||||||||| |||||||
Sbjct 8310 AAAAAGCAGCTAGCAATAGCTAACTGCTCATATAAGGGAATCGGAGAAAGATAACCATGT 8369
Query 52162 CATCTATAGTATTGACGGAATATTGAG-TTTTATTCA 52197
|| ||| |||| |||||||||| || |||||||||
Sbjct 8370 -GTCCATATTATTAACGGAATATTAAGTTTTTATTCA 8405
>seq16440
Length=49053
Score = 116 bits (128), Expect = 1e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 2299 ATGGAGCATGCTTTAGAGCTGCTTGTAAACCGAAAGGAAAACAAGTTTACAGTTAAAAAG 2358
|| || ||||||||||||||||||| || || | ||||| | ||||||||| |||
Sbjct 2380 ATAGATCATGCTTTAGAGCTGCTTGCTAATCGTGAAGAAAATGGATATACAGTTAAGAAG 2439
Query 2359 ATATGCGAAGTTACTGGCGTGAGTCGTACGGTTCTTTACGAGAGAGCAAAAGAAAAGGGG 2418
||||| ||||||||||| || ||||||| |||||||| |||| |||||||||| ||
Sbjct 2440 ATATGTGAAGTTACTGGTGTAAGTCGTAAAGTTCTTTATAAGAGGACAAAAGAAAAAGGA 2499
Query 2419 ATTATGTAG 2427
||||||||
Sbjct 2500 GTTATGTAG 2508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 180632656158850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |