Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_029024.1 Length=56505 Score E Sequences producing significant alignments: (Bits) Value seq20250 143 1e-29 seq16440 116 1e-21 >seq20250 Length=26292 Score = 143 bits (158), Expect = 1e-29 Identities = 139/175 (79%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 49015 AAAAAGGGAGATCGCATCGCCCAAGGTGTCATAGCGCCAGTCGAAACAGCTAATTTTGTT 49074 ||||||| | | |||||||| ||||| ||||||||| |||| | ||||||| |||||||| Sbjct 4490 AAAAAGGTACA-CGCATCGCTCAAGGCGTCATAGCGTCAGTAGTAACAGCTCATTTTGTT 4548 Query 49075 GAGGTAGACGAGCTATCACGTAGTGATCGTGGGACAGGTGGATTTGGAAGTACGGGCGTA 49134 ||||| |||||||||| |||||| || || || ||||||| | |||||| Sbjct 4549 GAGGTGGACGAGCTATTGGTTAGTGAACGAGGTGTTGGCGGATTTGAATCTACGGGAACG 4608 Query 49135 AAGTAAGACAAAATTTGAATTTTATTAAAAAAGGAGAATGAGAGATGAATATGTA 49189 |||||||||||||||||||||||||| |||||| || | | ||| |||| |||| Sbjct 4609 AAGTAAGACAAAATTTGAATTTTATT-AAAAAGAAGGA--ACAGAGGAATTTGTA 4660 Score = 87.8 bits (96), Expect = 6e-13 Identities = 80/97 (82%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 52108 AAAGAGCAGCTAGCAAAAGCTAACTGCTC-----AGGTAAT-GGAGAAAGATTACCATGT 52161 ||| |||||||||||| |||||||||||| ||| ||| |||||||||| ||||||| Sbjct 8310 AAAAAGCAGCTAGCAATAGCTAACTGCTCATATAAGGGAATCGGAGAAAGATAACCATGT 8369 Query 52162 CATCTATAGTATTGACGGAATATTGAG-TTTTATTCA 52197 || ||| |||| |||||||||| || ||||||||| Sbjct 8370 -GTCCATATTATTAACGGAATATTAAGTTTTTATTCA 8405 >seq16440 Length=49053 Score = 116 bits (128), Expect = 1e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 2299 ATGGAGCATGCTTTAGAGCTGCTTGTAAACCGAAAGGAAAACAAGTTTACAGTTAAAAAG 2358 || || ||||||||||||||||||| || || | ||||| | ||||||||| ||| Sbjct 2380 ATAGATCATGCTTTAGAGCTGCTTGCTAATCGTGAAGAAAATGGATATACAGTTAAGAAG 2439 Query 2359 ATATGCGAAGTTACTGGCGTGAGTCGTACGGTTCTTTACGAGAGAGCAAAAGAAAAGGGG 2418 ||||| ||||||||||| || ||||||| |||||||| |||| |||||||||| || Sbjct 2440 ATATGTGAAGTTACTGGTGTAAGTCGTAAAGTTCTTTATAAGAGGACAAAAGAAAAAGGA 2499 Query 2419 ATTATGTAG 2427 |||||||| Sbjct 2500 GTTATGTAG 2508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180632656158850