Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq20250 122 8e-23 seq7810 122 8e-23 >seq20250 Length=26292 Score = 122 bits (134), Expect = 8e-23 Identities = 234/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 104413 GGACATATCCATTCACGTAGATTTAAtttttttACTTCTTTATTCCGGTATCCACATTCA 104472 ||||| |||||||||||| |||| ||||| || |||||||| | |||||||| | Sbjct 6333 GGACAGTCCCATTCACGTAGGTTTAGATTTTTAACGTCTTTATTTTGATATCCACAGCAA 6392 Query 104473 GAACAAAGTTGAGAAGAAGGAAATGTTTTACCTATTTTTACAACAGTTCTACCATACCAA 104532 ||||| | ||| |||| ||||||||| || | || | | |||||||| Sbjct 6393 GAACATAATTGGCTGGAAGCAAATGTTTTCGATACGACAATGACTTGTTTGCCATACCAT 6452 Query 104533 TTAGCTTTGTACTCTAACATAGAAACAAATTCAGACCAAGACGCATCTGTGATAGATTTT 104592 || |||||||| |||||||| || ||||| ||||||| | || | || | |||| Sbjct 6453 TTTGCTTTGTATTCTAACATGGATCGAAATTGCAACCAAGATACCTCACTAATTGCTTTT 6512 Query 104593 GATAAATGATGATTTTTCATCATATTTTCTACCTGCAAGTCCTCCAAACAGATCA---CT 104649 | ||| | || ||| || | |||||| ||| ||||| ||||| | || ||| | | Sbjct 6513 GCTAACTTATAATTCTTTAACATATTCGATACTTGCAAATCCTCTATACCGATAACATCG 6572 Query 104650 TGGTTTTCGTGAATCAGTTTGGTGGACAGTTTATGTAGAAAATCACGTCTTGCATTTACA 104709 ||||||| | || | || || || | ||| | | |||| ||| | |||| Sbjct 6573 TGGTTTTTG---ATGATTTCAGTTGAAATTTTGTCCAAGTAATCTTTTCTAGTATTTGAT 6629 Query 104710 ATCTTTTCATGGATTTTTGCAACTTTTAAGCGTGCTTTATTCCA 104753 || | |||||| ||| | || || |||| ||| ||||||||| Sbjct 6630 ATGTATTCATGAATTCTAGCTACCTTTACTCGTTGTTTATTCCA 6673 Score = 98.7 bits (108), Expect = 9e-16 Identities = 173/249 (69%), Gaps = 15/249 (6%) Strand=Plus/Plus Query 105220 GCAGTAGCATCCACTTCTTTCAACCATGAAAGCTCCTTTTTCAATTGAGTTAATTGTTTT 105279 ||| || |||||||||||| | ||| |||||| || |||| || || |||| Sbjct 7098 GCAATACTATCCACTTCTTTTAGCCAAACAAGCTCTTTCTTCATGGCAGGTA---GTTTG 7154 Query 105280 GC---GCAAACATTATAACTCAATCCTTTTCCTGTTTGTTCGTATGTCTCATTCCATTTG 105336 || ||| | | ||| |||| ||||||||||| | || ||||| | ||||||| | Sbjct 7155 GCAGAGCATATACCATAGGTCAAGCCTTTTCCTGTCTCTTTGTATGCGTGATTCCATAAG 7214 Query 105337 GCGAGAAAATAGTTGAACACGAATCGACTACAACCAAATGTCTTATTGATT--AATTCAG 105394 | || |||| ||||| || || ||| ||| |||| || || |||||| |||| | Sbjct 7215 GATAGGAAATGATTGAATACAAAGCGAGAACACCCAATCGTTTTGTTGATTAGAATT--G 7272 Query 105395 CTTGCTCTTTTGTAGGATAGATTCGAAATTTAAACGCCTTATGCAT-----TTACATTCA 105449 |||| ||| | |||||||| ||||| ||| | || |||| ||| || ||||| Sbjct 7273 CTTGTGCTTGATTTGGATAGATACGAAACTTATAGGCTTTATTCATCATTATTTGATTCA 7332 Query 105450 CCTCCTTTT 105458 ||||| ||| Sbjct 7333 CCTCCATTT 7341 >seq7810 Length=38048 Score = 122 bits (134), Expect = 8e-23 Identities = 234/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 104413 GGACATATCCATTCACGTAGATTTAAtttttttACTTCTTTATTCCGGTATCCACATTCA 104472 ||||| |||||||||||| |||| ||||| || |||||||| | |||||||| | Sbjct 14129 GGACAGTCCCATTCACGTAGGTTTAGATTTTTAACGTCTTTATTTTGATATCCACAACAA 14188 Query 104473 GAACAAAGTTGAGAAGAAGGAAATGTTTTACCTATTTTTACAACAGTTCTACCATACCAA 104532 ||||| | ||| |||| ||||||||| || | || | | |||||||| Sbjct 14189 GAACATAATTGGCTGGAAGCAAATGTTTTCGATACGACAATGACTTGTTTGCCATACCAT 14248 Query 104533 TTAGCTTTGTACTCTAACATAGAAACAAATTCAGACCAAGACGCATCTGTGATAGATTTT 104592 || ||||| || || ||||| | ||| | |||||||| | || | || | |||| Sbjct 14249 TTTGCTTTATATTCCAACATGGTTCGAAACTGTGACCAAGATACTTCACTAATTGCTTTT 14308 Query 104593 GATAAATGATGATTTTTCATCATATTTTCTACCTGCAAGTCCTCCAAACAGATCA---CT 104649 | ||| | |||||| || | |||||| ||| ||||| ||||| | || ||| | | Sbjct 14309 GCTAACTTATGATTCTTTAACATATTCGATACTTGCAAATCCTCTATACCGATAACATCG 14368 Query 104650 TGGTTTTCGTGAATCAGTTTGGTGGACAGTTTATGTAGAAAATCACGTCTTGCATTTACA 104709 ||| ||| | || | || || || | ||| | || |||| ||| |||||| Sbjct 14369 TGGCTTTTG---ATGATTTCAGTTGAGATTTTGTCTAAGTAATCTTTTCTAGCATTTGAT 14425 Query 104710 ATCTTTTCATGGATTTTTGCAACTTTTAAGCGTGCTTTATTCCA 104753 || | |||||| ||| | || ||||||| ||| ||||||||| Sbjct 14426 ATGTATTCATGAATTCTAGCTACTTTTACTCGTTGTTTATTCCA 14469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451863012042000