Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5576 131 1e-25 seq24711 91.5 1e-13 seq18065 84.2 2e-11 seq16226 84.2 2e-11 >seq5576 Length=16168 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||||||||| || || || ||| |||| ||||||||| || Sbjct 1481 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTCC 1422 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| ||| || ||||| || || ||||||||||| | || ||| || Sbjct 1421 GACACCGTAGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCAA 1362 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| || | || |||||||| ||||| | || |||| || | |||| | ||||||||| Sbjct 1361 CAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAAC 1302 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||| ||| | || |||||| |||||||| | || || Sbjct 1301 ATCCAAAAGGAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGAGG 1255 >seq24711 Length=27656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || || || || | || || ||||| | Sbjct 4196 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACTCTCGAGGTGGAAAGTTCT 4255 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| |||| || | || | || | | || || || |||||| |||| ||| Sbjct 4256 GATACGATCGACAA-CGTTAAAGCGAAGATTCAG--GATAAGGAAGGTATTCCTCCGGAT 4312 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | || || || || || || |||||||| |||| ||| | |||| | |||||| Sbjct 4313 CAGCAGAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGACGTACCTTGGCGGATTAC 4372 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || || || | || ||||| |||||| | ||||| || Sbjct 4373 AATATCCAGAAGGAATCTACGCTTCACTTGGTGTTGCGTCTTCGTGGTGG 4422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || | || || || |||||| | || || |||||| || Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || || || |||||||| ||| |||| ||| | Sbjct 4712 GACACTATTGACAAT--GTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACC 4769 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || ||||| || || || | || |||| | | ||| | ||||||| Sbjct 4770 AGCAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACA 4829 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| | |||||||| |||||| | ||||| || Sbjct 4830 ACATCCAGAAAGAGTCTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 4878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| ||| ||||| |||| || ||||||||||| || | || Sbjct 4973 GATAAGGAAGGTATTCCACCGGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAG 5032 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| | || ||||| |||||||| ||| || ||||| ||||| ||| Sbjct 5033 GATGGTCGTACCTTGGCTGACTACAATATCCAAAAGGAGTCTACATTGCACTTGGTGTTG 5092 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 5093 CGTCTTCGTGGTGG 5106 >seq18065 Length=21122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || |||||||| || || || ||| |||| || |||||| || Sbjct 12179 ATGCAAATCTTTGTAAAGACTCTTACAGGCAAGACCATAACACTTGACGTTGAAAGCTCC 12238 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| ||||| | | ||| | Sbjct 12239 GACACAATAGACAAT--GTAAAGGCAAAGATTCAAGACAAGGAAGGAATCCATCCGGATC 12296 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | || || | || ||||||||||||||| | || || | || | |||| | || ||| Sbjct 12297 AACAGAGGCTCATCTTTGCCGGAAAACAACTTGAAGATGGCCGTACTCTTG-CAGACTAC 12355 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||| || ||| ||| | ||||||||| Sbjct 12356 AACATCCAGAAGGAGTCAACTCTCCATTTGGTT 12388 >seq16226 Length=39664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| ||||| || || || ||||| |||| || || ||| | Sbjct 11136 ATGCAGATTTTCGTGAAGACTCTCACCGGAAAGACCATTACCCTTGAGGTTGAGAGCTCG 11077 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| |||||| |||| ||| | Sbjct 11076 GACACAATTGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGACC 11019 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || |||| || || ||||| || | || || | |||| ||| | || |||| Sbjct 11018 AGCAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCTGACTACA 10959 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 10958 ACATCCAGAAGGAGTCTACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 10910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355737600724425