Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq18099 147 2e-30 >seq18099 Length=159039 Score = 147 bits (162), Expect = 2e-30 Identities = 416/626 (66%), Gaps = 21/626 (3%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || |||||||| || | |||||||||||| || | |||||||| || ||| Sbjct 20655 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTT 20596 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||| | || | || |||||||| || || | || || ||||| ||| Sbjct 20595 AAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAG 20536 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721 ||||| ||||| || || |||||||| | || |||| | |||| Sbjct 20535 AATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-------TTTGAGA 20483 Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | | ||||| | | ||||| | |||||| || |||| || ||||| || | || Sbjct 20482 TCCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGAT 20423 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 || ||||| | | | |||| |||| || || ||||| | || || Sbjct 20422 TGCACGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGA 20363 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTT 4899 |||||| || ||||| ||||| || ||||| || || |||||||| || ||| | |||| Sbjct 20362 ATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTT 20304 Query 4900 CTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 | | ||||| || || | ||| |||| | | | ||||||| ||| || |||||| Sbjct 20303 CGGAGACTTGTACATC-TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCA 20245 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGC-TTAAGTTT 5017 || || || || || | || || || |||| |||| || | | || || || Sbjct 20244 GATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATT 20186 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 || ||||| | |||| | | ||| |||||||| | ||||| || || ||||| Sbjct 20185 TTCCCAGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTC 20126 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGT 5136 ||||| |||||||| ||| || | || || |||||||||| || ||| ||||||| Sbjct 20125 GGCTTTCTTGTACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACAT-ACAGAATCTGT 20067 Query 5137 -TGTCGTTAGGTGTAAGAAGCGGTTC 5161 || ||| || ||||| || || || Sbjct 20066 CTGGTGTT-GGGGTAAGGAGAGGCTC 20042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426899835707075