Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_030903.1 Length=152069 Score E Sequences producing significant alignments: (Bits) Value seq7810 883 0.0 seq20250 792 0.0 seq4902 154 1e-32 >seq7810 Length=38048 Score = 883 bits (978), Expect = 0.0 Identities = 954/1254 (76%), Gaps = 21/1254 (2%) Strand=Plus/Minus Query 113742 ATATGTATA-TCATA-ACACACAAGGAGGTGAAAGTCATGTTGGTCAATAAAGCATATAA 113799 ||||| ||| ||||| || | | ||||||||| ||| | | |||||||| ||||| Sbjct 15186 ATATG-ATAGTCATATACCGAAATGGAGGTGAATCAAATGATAATTAATAAAGCTTATAA 15128 Query 113800 ATTTCGTATCTATCCAAGCAAAGAACAAGAAATACTGATTGCTAAAACAATCGGTTGTTC 113859 |||||||||||||||| ||| ||||| ||| || ||| ||||| || |||||||| Sbjct 15127 GTTTCGTATCTATCCAAATCAAGCACAAGCAATTCTAATTAACAAAACGATAGGTTGTTC 15068 Query 113860 TCGTTTTGTATTCAATCATTTCCTCGCAAAATGGAACGATACTTATAAGGCAACAGGAAA 113919 ||| |||||||||||||||||||| | |||| | | | || || | || ||||| Sbjct 15067 TCGCTTTGTATTCAATCATTTCCTATCCCTATGGGATCACGCATACAAAGAGACTGGAAA 15008 Query 113920 AGGTTTGACTTACAATTCGTGTTCTTCTCAATTAAC--CCAATTAAAGAAAGAATTAGTT 113977 |||||| || || | | || ||| | || | | ||| | |||||||| || ||| Sbjct 15007 AGGTTTAACATATGGTACATGCTCTGCCAAACTTCCTGCCA--TGAAGAAAGAGTTCGTT 14950 Query 113978 TGGTTAAAAGAGGTGGACAGCATTGCGATTCAATCTTCACTCAAAAACCTTGCTGATGCT 114037 ||| | ||||| ||||| || ||||||||||| || || | |||||||| ||||| Sbjct 14949 TGGCTCAAAGAAGTGGATAGTATTGCGATTCAGTCGTCTGTTCGCAACCTTGCGGATGCA 14890 Query 114038 TATTCTCGCTTCTTTAAGAAGCAAAACGATGCACCTCGCTTCAAGTCCAAAAAGAATAAG 114097 ||| | || || || || || ||||| ||| || || ||||| ||||| |||||||| Sbjct 14889 TATACACGATTTTTCAAAAAACAAAATAGTGCCCCGCGTTTCAAATCCAAGAAGAATAAC 14830 Query 114098 GTTCAATCTTATACAACAAAACACACGAATGGAAACATTGCCATTGTAGGCAACAAAATT 114157 || ||||||||||| |||||||| || |||| ||| |||||| ||||||| |||||||| Sbjct 14829 GTACAATCTTATACCACAAAACAAACAAATGAAAATATTGCCGTTGTAGGGAACAAAATA 14770 Query 114158 AAATTGCCGAAACTTGGTCTTGTTCGCTTTGCAAAAAGTCGTGAAGTACATGGTCGTATT 114217 || ||||| ||||| || |||||||| ||| | ||||||||||||||| | || |||||| Sbjct 14769 AAGTTGCCCAAACTAGGCCTTGTTCGATTTCCCAAAAGTCGTGAAGTAGAGGGACGTATT 14710 Query 114218 CTTAACGCTACTGTTAGACGTAATCCGAGTGGTAAATATTTTGTTTCCATTCTTGTAGAA 114277 | || || ||||||||||| || || ||||| ||||||||| || | | || ||| Sbjct 14709 GTAAATGCGACTGTTAGACGAAACCCTTCTGGTAGATATTTTGTGTCACTATTAGTTGAA 14650 Query 114278 ACAGAGGTGCAACCATTAGAAAAAACAGGTTCTTCTATTGGTATAGATGTTGGATTAAAA 114337 ||||| || ||| | | |||||| ||||| ||||| |||||||| ||| ||||| Sbjct 14649 ACAGAAGTACAAGAACTTCCGAAAACACATTCTTACATTGGGATAGATGTAGGACTAAAA 14590 Query 114338 ACATTCGCAACTCTTTCAGATGGAACACCATACGAAAATCCAAAGTGGTTTCGTAAACTT 114397 ||||| | | | |||||||||||||| || |||||||| |||| || || | | Sbjct 14589 GATTTCGCCATTTTGTCAGATGGAACACCCTATGAAAATCCGAAGTTTTTCCGATCATTA 14530 Query 114398 GAAGAAAAATTAGCAAACGCACAACGTATCCTTTCCAGACGCACAAAAGGCGGTTCTAAT 114457 ||||| || || || || ||||| ||| | ||||| ||| | | ||||| |||| Sbjct 14529 GAAGATAAGTTGGCGAAAGCACAGCGTGTTCTTTCTAGAAGAATGAAAGGATCTTCTCGC 14470 Query 114458 TGGAATAAGCAACGAATTAAAGTTGCACGTATTCACGAAAAAATCACCAATGCAAGAACA 114517 |||||||| |||||| | ||||| || | ||||| ||| | || | ||||| |||| | Sbjct 14469 TGGAATAAACAACGAGTAAAAGTAGCTAGAATTCATGAATACATATCAAATGCTAGAAAA 14410 Query 114518 GATTACTTGCAAAAAATCTCTACCGAAATCATCAAAAACCACGATGTAATCGGTATTGAA 114577 |||||||| | |||||||| || ||||||||||||| ||||||||| |||||||| || Sbjct 14409 GATTACTTAGACAAAATCTCAACTGAAATCATCAAAAGCCACGATGTTATCGGTATAGAG 14350 Query 114578 GATTTGCAAGTAAGTAATATGCTAAAGAATCATAAGTTAGCCAAATCTATTAGTGAAGTA 114637 |||||||||||| |||||| ||||||||||||||||||| ||| | |||||||||||| Sbjct 14349 GATTTGCAAGTATCGAATATGTTAAAGAATCATAAGTTAGCAAAAGCAATTAGTGAAGTA 14290 Query 114638 TCTTGGTATCAATTCAGAACGATGCTTGAATACAAAGCGAAATGGTACGGCAAACAAGTT 114697 ||||||| || || |||| ||| | ||||| ||||| |||||||| ||||||||||| Sbjct 14289 TCTTGGTCACAGTTTCGAACCATGTTGGAATATAAAGCAAAATGGTATGGCAAACAAGTC 14230 Query 114698 GTTGCGGTATCTAAAACGTTTGCAAGTTCT---CAATTGTGTTCGTGTTGCGGATACAAA 114754 ||| ||||| ||||| ||||| ||| ||||| ||||| ||||| ||||| || Sbjct 14229 ATTGTCGTATCGAAAACATTTGC---TTCCAGCCAATTATGTTCTTGTTGTGGATATCAA 14173 Query 114755 AACAAAGACGTTAAGAATCTAAATCTTCGTGAATGGGATTGCCCATCTTGCGGAACACAT 114814 || ||||||||||| |||||||| || ||||||||||| || || ||||| | ||||| Sbjct 14172 AATAAAGACGTTAAAAATCTAAACCTACGTGAATGGGACTGTCCTTCTTGTCGTACACAC 14113 Query 114815 CACGATAGAGACATTAACGCAGGACAAAATATTAAAAATGAAGCGATAAGACTTCTAACC 114874 || ||||| || ||||||||| | ||| | || |||||||||||||| ||||||||| Sbjct 14112 CATGATAGGGATATTAACGCAAGTATCAATCTAAAGAATGAAGCGATAAGGCTTCTAACC 14053 Query 114875 GTAGGGGCTACGGGGTTAGCCTACTAAATATCTGTTCGATAGAACGGAGTTCGTAGGAAT 114934 | | || || ||||||||||||| | ||| |||||||||||| | | ||||||| Sbjct 14052 GCAAGGACTGCGGGGTTAGCCTAATCAATTAGAGTTCGATAGAACTCTTTACTTAGGAAT 13993 Query 114935 CCCTCACTTCAAACAACCCGTAAGGGTGTTAAGTGGGGGTAGTTCAAGAACAAA 114988 |||||||||| | ||| ||| | ||||||||||||||||| | |||| Sbjct 13992 CCCTCACTTCTA--AAC---GAAGTG---AAAGTGGGGGTAGTTCAATATCAAA 13947 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/135 (75%), Gaps = 10/135 (7%) Strand=Plus/Minus Query 114850 AAATGAAGCGATAAGACTTCTAACCGTAGGGGCTACGGGGTTAGCCTACTAAATATCTGT 114909 ||||||||| ||||| |||||||||||| || || ||||| |||||| | || || Sbjct 20486 AAATGAAGCAATAAGGCTTCTAACCGTAAGGACTGCGGGGGCAGCCTAATCAACTAGAGT 20427 Query 114910 TCGATAGAACGGAGTTCGTAGGAATCCCTCACTTC-AAACAACCCGTAAGGGTGTTAAGT 114968 ||||| |||| | | ||||||| ||||||||| |||| | |||| |||| Sbjct 20426 TCGATTGAACTCTTTACTTAGGAATTCCTCACTTCTAAACGA--AGTAA-------AAGT 20376 Query 114969 GGGGGTAGTTCAAGA 114983 ||||||||||||||| Sbjct 20375 GGGGGTAGTTCAAGA 20361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 113452 TAGGCGAGAATACTCCCACCTCAAGGAACGTGAAGGG-CGTAGCCCAGTGAGTAGGTGGG 113510 ||| | |||| ||||| |||||| || ||||||||| | || |||||||||||||||| Sbjct 15343 TAGCCAAGAAGACTCCTTCCTCAAAGAGCGTGAAGGGTCACAGTCCAGTGAGTAGGTGGG 15284 Query 113511 AGATGAATCGCCTTCGGACAAGGGAT 113536 ||||||| | ||||| ||||||||| Sbjct 15283 AGATGAACTGGCTTCGAACAAGGGAT 15258 >seq20250 Length=26292 Score = 792 bits (878), Expect = 0.0 Identities = 909/1224 (74%), Gaps = 50/1224 (4%) Strand=Plus/Minus Query 113764 GGAGGTGAAAGTCATGTTGGTCAATAAAGCATATAAATTTCGTATCTATCCAAGCAAAGA 113823 ||||||||| || || | |||||||| ||||| |||||||||||||||| ||| Sbjct 7337 GGAGGTGAATCAAATAATGATGAATAAAGCCTATAAGTTTCGTATCTATCCAAATCAAGC 7278 Query 113824 ACAAGAAATACTGATTGCTAAAACAATCGGTTGTTCTCGTTTTGTATTCAATCATTTCCT 113883 ||||| ||| || || ||||| || || |||||||| |||||||||||||||||||| Sbjct 7277 ACAAGCAATTCTAATCAACAAAACGATTGGGTGTTCTCGCTTTGTATTCAATCATTTCCT 7218 Query 113884 CGCAAAATGGAACGATACTTATAAGGCAACAGGAAAAGGTTTGACTTACAATTCGTGTTC 113943 | |||||| | | || || | ||||||||||| ||||| || | || || Sbjct 7217 ATCCTTATGGAATCACGCATACAAAGAGACAGGAAAAGGCTTGACCTATGGTATATGCTC 7158 Query 113944 TTCTCAATTAAC--CCAATTAAAGAAAGAATTAGTTTGGTTAAAAGAGGTGGACAGCATT 114001 | | || || | ||| | |||||||| | |||||| ||||||| ||||| || ||| Sbjct 7157 TGCCAAACTACCTGCCA--TGAAGAAAGAGCTTGTTTGGCTAAAAGAAGTGGATAGTATT 7100 Query 114002 GCGATTCAATCTTCACTCAAAAACCTTGCTGATGCTTATTCTCGCTTCTTTAAGAAGCAA 114061 |||||||| || || | |||||||| ||||||||| Sbjct 7099 GCGATTCAGTCGTCTGTTCGCAACCTTGCGGATGCTTAT--------------------- 7061 Query 114062 AACGATGCACCTCGCTTCAAGTCCAAAAAGAATAAGGTTCAATCTTATACAACAAAACAC 114121 ||| ||||| || || || ||||| || || ||||||||||| |||||||| Sbjct 7060 -ACG--------CGCTTTAAATCTAAGAAGAACAACGTACAATCTTATACCACAAAACAA 7010 Query 114122 ACGAATGGAAACATTGCCATTGTAGGCAACAAAATTAAATTGCCGAAACTTGGTCTTGTT 114181 || |||| ||| |||||| ||||||| |||||||| || ||||||||||| || |||||| Sbjct 7009 ACAAATGAAAATATTGCCGTTGTAGGGAACAAAATAAAGTTGCCGAAACTAGGCCTTGTT 6950 Query 114182 CGCTTTGCAAAAAGTCGTGAAGTACATGGTCGTATTCTTAACGCTACTGTTAGACGTAAT 114241 || ||||| ||||||| |||||| | || |||||| | || ||||| ||||||| || Sbjct 6949 CGATTTGCCAAAAGTCACGAAGTAGAGGGGCGTATTGTAAATGCTACAGTTAGACAGAAC 6890 Query 114242 CCGAGTGGTAAATATTTTGTTTCCATTCTTGTAGAAACAGAGGTGCAACCATTAGAAAAA 114301 || ||||| ||||||||| || | | || |||||||| || ||| | | ||| Sbjct 6889 CCTTCTGGTAGATATTTTGTGTCACTATTAGTTGAAACAGAAGTACAAAAACTTCCGAAA 6830 Query 114302 ACAGGTTCTTCTATTGGTATAGATGTTGGATTAAAAACATTCGCAACTCTTTCAGATGGA 114361 ||| ||||| ||||| |||||||| ||| ||||| ||||| | | | ||||||||| Sbjct 6829 ACACATTCTTACATTGGAATAGATGTAGGACTAAAAGATTTCGCTATTTTGTCAGATGGA 6770 Query 114362 ACACCATACGAAAATCCAAAGTGGTTTCGTAAACTTGAAGAAAAATTAGCAAACGCACAA 114421 |||| || |||||||| || | || || | | ||||| || || || || ||||| Sbjct 6769 ACACACTATGAAAATCCGAAATTTTTCCGATCATTAGAAGATAAGTTGGCGAAGGCACAG 6710 Query 114422 CGTATCCTTTCCAGACGCACAAAAGGCGGTTCTAATTGGAATAAGCAACGAATTAAAGTT 114481 ||| | ||||| ||| | | ||||| |||| |||||||| |||||| | || || Sbjct 6709 CGTGTTCTTTCTAGAAGAATGAAAGGATCTTCTCGCTGGAATAAACAACGAGTAAAGGTA 6650 Query 114482 GCACGTATTCACGAAAAAATCACCAATGCAAGAACAGATTACTTGCAAAAAATCTCTACC 114541 || | ||||| ||| | || | ||| | |||| |||||||||| | ||||| || || Sbjct 6649 GCTAGAATTCATGAATACATATCAAATACTAGAAAAGATTACTTGGACAAAATTTCAACT 6590 Query 114542 GAAATCATCAAAAACCACGATGTAATCGGTATTGAAGATTTGCAAGTAAGTAATATGCTA 114601 ||||||||||||||||||||||| |||||||| || |||||||||||| |||||| || Sbjct 6589 GAAATCATCAAAAACCACGATGTTATCGGTATAGAGGATTTGCAAGTATCGAATATGTTA 6530 Query 114602 AAGAATCATAAGTTAGCCAAATCTATTAGTGAAGTATCTTGGTATCAATTCAGAACGATG 114661 |||||| |||||||||| ||| | |||||||| |||||||||| ||||| || | ||| Sbjct 6529 AAGAATTATAAGTTAGCAAAAGCAATTAGTGAGGTATCTTGGTTGCAATTTCGATCCATG 6470 Query 114662 CTTGAATACAAAGCGAAATGGTACGGCAAACAAGTTGTTGCGGTATCTAAAACGTTTGCA 114721 | ||||||||||| |||||||| ||||||||||| ||| ||||| ||||| ||||| Sbjct 6469 TTAGAATACAAAGCAAAATGGTATGGCAAACAAGTCATTGTCGTATCGAAAACATTTGC- 6411 Query 114722 AGTTCT---CAATTGTGTTCGTGTTGCGGATACAAAAACAAAGACGTTAAGAATCTAAAT 114778 ||| ||||| ||||| || || ||||| |||| ||||||||||| |||||||| Sbjct 6410 --TTCCAGCCAATTATGTTCTTGCTGTGGATATCAAAATAAAGACGTTAAAAATCTAAAC 6353 Query 114779 CTTCGTGAATGGGATTGCCCATCTTGCGGAACACATCACGATAGAGACATTAACGCAGGA 114838 || ||||||||||| || || ||||| | ||||| || ||||| || ||||||||| | Sbjct 6352 CTACGTGAATGGGACTGTCCTTCTTGTCGTACACACCATGATAGGGATATTAACGCAAGC 6293 Query 114839 CAAAATATTAAAAATGAAGCGATAAGACTTCTAACCGTAGGGGCTACGGGGTTAGCCTAC 114898 ||| | || |||||||||||||| |||||||||| | || || ||||||||||||| Sbjct 6292 ATCAATCTAAAGAATGAAGCGATAAGGCTTCTAACCGCAAGGACTGCGGGGTTAGCCTAA 6233 Query 114899 TAAATATCTGTTCGATAGAACGGAGTTCGTAGGAATCCCTCACTTC-AAACAACCCGTAA 114957 | ||| |||||||||||| | | ||||||||||||||||| |||||| |||| Sbjct 6232 TCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCTCACTTCTAAACAA--AGTAA 6175 Query 114958 GGGTGTTAAGTGGGGGTAGTTCAA 114981 ||||||||||||||||| Sbjct 6174 -------AAGTGGGGGTAGTTCAA 6158 Score = 98.7 bits (108), Expect = 1e-15 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 113452 TAGGCGAGAATACTCCCACCTCAAGGAACGTGAAGGG-CGTAGCCCAGTGAGTAGGTGGG 113510 ||| | |||| ||||| ||||||||| ||||||||| | || |||||||||||||||| Sbjct 7517 TAGCCAAGAAGACTCCTTCCTCAAGGAGCGTGAAGGGTCACAGTCCAGTGAGTAGGTGGG 7458 Query 113511 AGATGAATCGCCTTCGGACAAGGGATAGC 113539 |||||||| | ||||| |||||||||||| Sbjct 7457 AGATGAATTGGCTTCGAACAAGGGATAGC 7429 >seq4902 Length=31017 Score = 154 bits (170), Expect = 1e-32 Identities = 244/352 (69%), Gaps = 11/352 (3%) Strand=Plus/Plus Query 114552 AAAACCACGATGTAATCGGTATTGAAGATTTGCAAGTAAGTAATATGCTAAAGAATCATA 114611 |||| || |||| || | || ||| | || || | ||| |||||| || ||| | Sbjct 27080 AAAAGCATCATGTCATTGATAAAGAATAGTTATAATTCAGTGGTATGCTCAAAAATAGAA 27139 Query 114612 AGTTAGCCAAATCTATTAGTGAAGTATCTTGGTATCAATTCAGAACGATGCTTGAATACA 114671 || | | ||| | |||||||| | |||||| ||||| ||| ||| | |||| | Sbjct 27140 AGCTTGTAAAAGCGATTAGTGACATGTCTTGGCCACAATTTTAAACAATGTTGAAATATA 27199 Query 114672 AAGCGAAATGGTACGGCAAACAAGTTGTTGCGGTATCTAAAACGTTTGCAAGTTCTCAAT 114731 ||| || ||||| | |||||| |||| |||||||||| ||||| | ||||| Sbjct 27200 AAGTAAAGTGGTATAGTAAACAATGAGTTGTAATATCTAAAACATTTGCTTCTAGTCAAT 27259 Query 114732 TGTGTTCGTGTTGCGGATACAAAAACAAAGACGTTAAGAATCTAAATCTTCGTGAATGGG 114791 | ||||| |||| || ||||||| ||| | ||| |||||||| ||||||| | || Sbjct 27260 TATGTTCCAATTGCAACTATAAAAACATAGATGCTAAAAATCTAAACATTCGTGAGTAGG 27319 Query 114792 ATTGCCCATCTTGCGGAACACATCACGATAGAGACATTAACGCAGGACAAAATATTAAAA 114851 ||| || | ||| || |||||||| |||||||| |||| ||| || ||| ||| || Sbjct 27320 ATTATCCTTATTGTGGCACACATCATGATAGAGATCGTAACACAGCACTCAATCTTAGAA 27379 Query 114852 ATGAAGCGATAAGACTTCTAACCGTAGGGGCTACGGGGTTAGCCTACTAAAT 114903 ||||||| |||||||||| ||| ||| ||||||||| ||| Sbjct 27380 ATGAAGC-----------TAACCGTAGGAACTATCGGGATAGCCTACTGAAT 27420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486317814621000