Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_030925.1 Length=138081 Score E Sequences producing significant alignments: (Bits) Value seq7810 331 8e-86 seq20250 215 5e-51 >seq7810 Length=38048 Score = 331 bits (366), Expect = 8e-86 Identities = 433/597 (73%), Gaps = 2/597 (0%) Strand=Plus/Plus Query 37261 CCATCAGAAAGAATGGCAAAGTCAGTGATGCCTAAGTCTATACCAATAGATGATTCAGTT 37320 ||||| || | |||||| || || | | |||| ||||| ||||| | || | ||| Sbjct 14567 CCATCTGACAAAATGGCGAAATCTTTTAGTCCTACATCTATCCCAATGTAAGAATGTGTT 14626 Query 37321 TTCTCCAATGACTGTACTTCTATTTCTGCAAGAATCGATACAAAGTATTTACCACTAGGA 37380 ||| | | ||||||||| |||| | | | || ||||| ||| ||||| ||| Sbjct 14627 TTCGGAAGTTCTTGTACTTCTGTTTCAACTAATAGTGACACAAAATATCTACCAGAAGGG 14686 Query 37381 TTTCGTCTAACAGTAGCATTAAGGATACGACCATGTACTTCACGACTTTTGGCAAAGCGA 37440 |||||||||||||| ||||| | ||||| || | ||||||||||||||||| ||| ||| Sbjct 14687 TTTCGTCTAACAGTCGCATTTACAATACGTCCCTCTACTTCACGACTTTTGGGAAATCGA 14746 Query 37441 ACAAGACCAAGTTTCGGCAATTTGATTTTGCTGTCTACAATGGTAATGTTATTGTTTGTT 37500 ||||| || ||||| ||||| || |||||| | |||||| || ||| || | |||||| Sbjct 14747 ACAAGGCCTAGTTTGGGCAACTTTATTTTGTTCCCTACAACGGCAATATTTTCATTTGTT 14806 Query 37501 TCTTTAGTCGTGTAGGATTGTACCTTATTCTTTTTAGACTTGAAGCGTGGTGCTTTATTT 37560 | ||| || || || |||||||| |||||||| || || ||||| || || || ||||| Sbjct 14807 TGTTTTGTGGTATAAGATTGTACGTTATTCTTCTTGGATTTGAAACGCGGGGCACTATTT 14866 Query 37561 TGTTTCTTGAAGAATCGAGTATACGAATCAGCAAGGTTTTTCAGTGAAGATTGAAGGGCA 37620 ||||| ||||| ||||| ||||| | ||| |||||||| | || || |||| ||| Sbjct 14867 TGTTTTTTGAAAAATCGTGTATATGCATCCGCAAGGTTGCGAACAGACGACTGAATCGCA 14926 Query 37621 ATGCTATCAACTTCTTTTAGCCATACTAATTTCTTTTTTAGTTG-TGTTAATTCAGCAGA 37679 || ||||| |||||||| ||||| || || ||||| || | | | | || ||||| Sbjct 14927 ATACTATCCACTTCTTTGAGCCAAACGAA-CTCTTTCTTCATGGCAGGAAGTTTGGCAGA 14985 Query 37680 ACAAGAATTGTAAGTTAATCCTTTGCCAGTTTCTTTGTATGTATCGTTCCATTGCCCTAA 37739 || | | || ||||| ||||| ||||| |||||||||| | | |||| | || Sbjct 14986 GCATGTACCATATGTTAAACCTTTTCCAGTCTCTTTGTATGCGTGATCCCATAGGGATAG 15045 Query 37740 AAAGCGATTAAATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCTGTTC 37799 || |||| |||||||| ||| ||| || || ||||| ||||| ||| | ||| | Sbjct 15046 GAAATGATTGAATACAAAGCGAGAACAACCTATCGTTTTGTTAATTAGAATTGCTTGTGC 15105 Query 37800 TTTGGTTGGATAGATACGGAATTTGTATGCTTTGTTGACTAACATTGTTTACACCTC 37856 || ||||||||||||| || || || ||||| || | || |||| | |||||| Sbjct 15106 TTGATTTGGATAGATACGAAACTTATAAGCTTTATTAATTATCATTTGATTCACCTC 15162 >seq20250 Length=26292 Score = 215 bits (238), Expect = 5e-51 Identities = 391/576 (68%), Gaps = 32/576 (6%) Strand=Plus/Plus Query 37261 CCATCAGAAAGAATGGCAAAGTCAGTGATGCCTAAGTCTATACCAATAGATGATTCAGTT 37320 ||||| || | ||| || || || | | |||| ||||| ||||| | || | ||| Sbjct 6771 CCATCTGACAAAATAGCGAAATCTTTTAGTCCTACATCTATTCCAATGTAAGAATGTGTT 6830 Query 37321 TTCTCCAATGACTGTACTTCTATTTCTGCAAGAATCGATACAAAGTATTTACCACTAGGA 37380 ||| | | ||||||||| |||| | | | || ||||| ||| ||||| ||| Sbjct 6831 TTCGGAAGTTTTTGTACTTCTGTTTCAACTAATAGTGACACAAAATATCTACCAGAAGGG 6890 Query 37381 TTTCGTCTAACAGTAGCATTAAGGATACGACCATGTACTTCACGACTTTTGGCAAAGCGA 37440 || ||||||| |||||||| | ||||| || | |||||| ||||||||||||| ||| Sbjct 6891 TTCTGTCTAACTGTAGCATTTACAATACGCCCCTCTACTTCGTGACTTTTGGCAAATCGA 6950 Query 37441 ACAAGACCAAGTTTCGGCAATTTGATTTTGCTGTCTACAATGGTAATGTTATTGTTTGTT 37500 ||||| || ||||||||||| || |||||| | |||||| || ||| || | |||||| Sbjct 6951 ACAAGGCCTAGTTTCGGCAACTTTATTTTGTTCCCTACAACGGCAATATTTTCATTTGTT 7010 Query 37501 TCTTTAGTCGTGTAGGATTGTACCTTATTCTTTTTAGACTTGAAGCGTGGTGCTTTATTT 37560 | ||| || || || |||||||| || ||||| ||||| |||| Sbjct 7011 TGTTTTGTGGTATAAGATTGTACGTTGTTCTTCTTAGA---------------TTTA--- 7052 Query 37561 TGTTTCTTGAAGAATCGAGTATACGAATCAGCAAGGTTTTTCAGTGAAGATTGAAGGGCA 37620 || || ||||| | ||| |||||||| | || || |||| ||| Sbjct 7053 ------------AAGCGCGTATAAGCATCCGCAAGGTTGCGAACAGACGACTGAATCGCA 7100 Query 37621 ATGCTATCAACTTCTTTTAGCCATACTAATTTCTTTTTTAGTTG-TGTTAATTCAGCAGA 37679 || ||||| |||||||||||||| || || ||||| || | | | || || ||||| Sbjct 7101 ATACTATCCACTTCTTTTAGCCAAAC-AAGCTCTTTCTTCATGGCAGGTAGTTTGGCAGA 7159 Query 37680 ACAAGAATTGTAAGTTAATCCTTTGCCAGTTTCTTTGTATGTATCGTTCCATTGCCCTAA 37739 || | || || || ||||| || || |||||||||| | |||||| || Sbjct 7160 GCATATACCATAGGTCAAGCCTTTTCCTGTCTCTTTGTATGCGTGATTCCATAAGGATAG 7219 Query 37740 AAAGCGATTAAATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCTGTTC 37799 || |||| |||||||| ||| ||| || || ||||| |||| ||| | ||| | Sbjct 7220 GAAATGATTGAATACAAAGCGAGAACACCCAATCGTTTTGTTGATTAGAATTGCTTGTGC 7279 Query 37800 TTTGGTTGGATAGATACGGAATTTGTATGCTTTGTT 37835 || ||||||||||||| || || || ||||| || Sbjct 7280 TTGATTTGGATAGATACGAAACTTATAGGCTTTATT 7315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441572314809000